Co-expression analysis

Gene ID	1614718_at
Gene name	hypothetical protein LOC100264520
Homology with Arabidopsis	Similar to At5g20700: senescence-associated protein-related (HF=7e-11)
Module size	6 genes
NF	0.02
%ile	4.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.94	1614718_at	CB347599	hypothetical protein LOC100264520	-	7e-11	At5g20700	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.93	1610618_at	CB347516	hypothetical protein LOC100264520	-	3e-1	At5g62480	ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)	O.I.	H.G.	S.X.	Please select
0.02	3.2	0.95	1611686_at	CB969423	hypothetical protein LOC100255085	-	7e+0	At5g26080	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.96	1606658_at	CB981496	hypothetical protein LOC100242421 /// hypothetical protein LOC100249803	-	5e-26	At2g22870	EMB2001 (embryo defective 2001)	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.94	1607788_at	CA815954	hypothetical protein LOC100254226	-	7e-19	At5g11270	OCP3 (OVEREXPRESSOR OF CATIONIC PEROXIDASE 3)	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.94	1615203_at	CA818658	hypothetical protein LOC100258284	-	7e-2	At5g57060	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	98.1	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.5	95.7	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.4	95.5	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.1	94.6	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.0	94.2	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.0	94.2	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the wheat gene, Ta.22389.1.S1_at, orthologous to the query gene, 1614718_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	Ta.22389.1.S1_at	At5g20700	-	-	2e-1	At1g78480	prenyltransferase/squalene oxidase repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	Ta.3442.1.S1_at	At5g20700	-	-	6e+0	At5g13050	5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE)	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.30439.1.S1_at	At5g20700	-	-	7e+0	At2g38530	LTP2 (LIPID TRANSFER PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.50	72.4	TaAffx.66041.1.S1_at	At5g20700	-	-	2e+0	At3g18280	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	TaAffx.113825.1.S1_at	At5g20700	-	-	7e+0	At5g58970	ATUCP2 (UNCOUPLING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.38572.2.S1_at	At5g20700	-	-	4e-3	At5g60690	REV (REVOLUTA)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage