Co-expression analysis

Gene ID 1614718_at
Gene name hypothetical protein LOC100264520
Homology with ArabidopsisSimilar to At5g20700: senescence-associated protein-related (HF=7e-11)
Module size 6 genes
NF 0.02
%ile 4.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.941614718_atCB347599hypothetical protein LOC100264520-7e-11At5g20700senescence-associated protein-relatedO.I.H.G.S.X.
0.4057.70.931610618_atCB347516hypothetical protein LOC100264520-3e-1At5g62480ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)O.I.H.G.S.X.
0.023.20.951611686_atCB969423hypothetical protein LOC100255085-7e+0At5g26080proline-rich family proteinO.I.H.G.S.X.
0.012.10.961606658_atCB981496hypothetical protein LOC100242421 /// hypothetical protein LOC100249803-5e-26At2g22870EMB2001 (embryo defective 2001)O.I.H.G.S.X.
0.012.10.941607788_atCA815954hypothetical protein LOC100254226-7e-19At5g11270OCP3 (OVEREXPRESSOR OF CATIONIC PEROXIDASE 3)O.I.H.G.S.X.
0.012.10.941615203_atCA818658hypothetical protein LOC100258284-7e-2At5g57060unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.198.1GSM322361genotype: Chardonnay - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.595.7GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.495.5GSM322368genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.194.6GSM322362genotype: Chardonnay - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.094.2GSM322366genotype: Chardonnay - disease type: Healthy - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.094.2GSM322363genotype: Chardonnay - disease type: Bois Noir infected - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.993.8GSM287873Green hard berry B9 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.893.4GSM299461C_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.793.0GSM322369genotype: Incrocio Manzoni - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.692.5GSM287883Green soft berry A23 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.5309.1.S1_at, orthologous to the query gene, 1614718_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5979.5Gma.5309.1.S1_atAt5g20700--2e-3At5g20700senescence-associated protein-relatedO.I.H.G.S.X.
0.5979.5GmaAffx.28095.1.S1_atAt5g20700--8e-1At4g16990RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3)O.I.H.G.S.X.
0.5374.2GmaAffx.93407.1.S1_atAt5g20700--1e+0At4g35810oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.5071.7GmaAffx.93131.1.S1_s_atAt5g20700--3e-2At3g21510AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)O.I.H.G.S.X.
0.4057.1Gma.1370.1.S1_atAt5g20700--5e-2At2g15230ATLIP1 (Arabidopsis thaliana lipase 1)O.I.H.G.S.X.
0.3650.8GmaAffx.56482.1.S1_atAt5g20700--3e-1At1g77640AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.3650.8Gma.2831.1.S1_s_atAt5g20700--1e-8At1g66140ZFP4 (ZINC FINGER PROTEIN 4)O.I.H.G.S.X.
0.3040.4Gma.6611.2.S1_s_atAt5g20700phosphatidylinositol-specific phospholipase C /// phosphoinositide-specific phospholipase C P13-4e-28At3g08510ATPLC2 (PHOSPHOLIPASE C 2)O.I.H.G.S.X.
0.2939.0GmaAffx.66580.1.S1_atAt5g20700--2e-6At5g52430hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.2532.6GmaAffx.91549.1.S1_atAt5g20700phosphatidylinositol-specific phospholipase C /// phosphoinositide-specific phospholipase C P13-5e-15At3g08510ATPLC2 (PHOSPHOLIPASE C 2)O.I.H.G.S.X.
0.2430.9GmaAffx.66304.1.S1_atAt5g20700--1e+0At3g09710IQD1 (IQ-DOMAIN 1)O.I.H.G.S.X.
0.1923.7GmaAffx.62697.1.S1_atAt5g20700--4e+0At5g49015Expressed proteinO.I.H.G.S.X.
0.1923.7Gma.11925.1.S1_atAt5g20700--3e-2At1g11530ATCXXS1 (C-terminal cysteine residue is changed to a serine 1)O.I.H.G.S.X.
0.1518.7Gma.4259.1.S1_s_atAt5g20700--6e-13At3g04730IAA16O.I.H.G.S.X.
0.1316.3Gma.4259.2.S1_s_atAt5g20700--5e-4At3g04730IAA16O.I.H.G.S.X.
0.1215.1Gma.15087.1.S1_atAt5g20700--5e+0At1g01530AGL28 (AGAMOUS-LIKE 28)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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