CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1614718_at

Gene name hypothetical protein LOC100264520
Homology with Arabidopsis Similar to At5g20700: senescence-associated protein-related (HF=7e-11)

Module size 6 genes

NF 0.02

%ile 4.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.94 1614718_at CB347599 hypothetical protein LOC100264520 - 7e-11 At5g20700 senescence-associated protein-related O.I. H.G. S.X.
0.40 57.7 0.93 1610618_at CB347516 hypothetical protein LOC100264520 - 3e-1 At5g62480 ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9) O.I. H.G. S.X.
0.02 3.2 0.95 1611686_at CB969423 hypothetical protein LOC100255085 - 7e+0 At5g26080 proline-rich family protein O.I. H.G. S.X.
0.01 2.1 0.96 1606658_at CB981496 hypothetical protein LOC100242421 /// hypothetical protein LOC100249803 - 5e-26 At2g22870 EMB2001 (embryo defective 2001) O.I. H.G. S.X.
0.01 2.1 0.94 1607788_at CA815954 hypothetical protein LOC100254226 - 7e-19 At5g11270 OCP3 (OVEREXPRESSOR OF CATIONIC PEROXIDASE 3) O.I. H.G. S.X.
0.01 2.1 0.94 1615203_at CA818658 hypothetical protein LOC100258284 - 7e-2 At5g57060 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.1 98.1 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.5 95.7 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.4 95.5 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.1 94.6 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.0 94.2 GSM322366 genotype: Chardonnay - disease type: Healthy - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.0 94.2 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.9 93.8 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.8 93.4 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7 93.0 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.6 92.5 GSM287883 Green soft berry A23 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g20700, orthologous to the query gene, 1614718_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At5g20700 832193 senescence-associated protein-related F:unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.29 30.3 At1g10200 837558 WLIM1 F:transcription factor activity, zinc ion binding;P:biological_process unknown;C:plasma membrane;MPOF O.I. H.G. S.X.
0.13 5.8 At1g31940 840084 unknown protein F:unknown;P:unknown;C:plasma membrane;P O.I. H.G. S.X.
0.11 4.1 At3g23600 821939 dienelactone hydrolase family protein F:hydrolase activity;P:response to salt stress;C:apoplast, nucleus, plasma membrane, cytoplasm;FBPMOA O.I. H.G. S.X.
0.07 1.9 At2g25310 817069 carbohydrate binding F:carbohydrate binding;P:biological_process unknown;C:endomembrane system;MFPOB O.I. H.G. S.X.
0.03 0.6 At3g13410 820541 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;P O.I. H.G. S.X.
0.02 0.4 At1g28140 839708 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPMO O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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