Co-expression analysis

Gene ID 1614706_s_at
Gene name
Homology with ArabidopsisSimilar to At5g43410: ethylene-responsive factor, putative (HF=4e-3)
Module size 6 genes
NF 0.13
%ile 21.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.941614706_s_atCF605994--4e-3At5g43410ethylene-responsive factor, putativeO.I.H.G.S.X.
0.3243.10.981615991_s_atCF404409hypothetical protein LOC100241833-1e-22At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.H.G.S.X.
0.3039.40.971611191_atCF207954hypothetical protein LOC100264622-1e-60At5g11850protein kinase family proteinO.I.H.G.S.X.
0.1819.40.971620409_atCF213665hypothetical protein LOC100264561-3e-1At3g51230unknown proteinO.I.H.G.S.X.
0.056.00.971606661_atCD004606hypothetical protein LOC100246447-2e+0At5g08050-O.I.H.G.S.X.
0.045.20.971609452_atBQ794280hypothetical protein LOC100249768-3e-1At4g31460ribosomal protein L28 family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.299.5GSM299456C_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
7.099.1GSM299454B_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
6.799.0GSM299457C_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
6.198.7GSM299453B_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.495.5GSM436428V. riparia (VR, PI588259) SD, 13h 42 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.395.2GSM436427V. riparia (VR, PI588259) SD, 13h 42 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.094.2GSM299459D_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.491.3GSM299460D_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.491.3GSM436429V. riparia (VR, PI588259) SD, 13h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436408V. riparia (VR, PI588259) LD, 15h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig3859_s_at, orthologous to the query gene, 1614706_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.1Contig3859_s_atAt5g43410--3e-1At4g10970unknown proteinO.I.H.G.S.X.
0.5066.9Contig5374_atAt5g43410--3e+0At3g23170unknown proteinO.I.H.G.S.X.
0.4661.0Contig3478_atAt5g43410--1e-115At5g05170CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)O.I.H.G.S.X.
0.4458.9HVSMEl0015K12f_atAt5g43410--4e+0At5g24370invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.4053.1Contig7819_atAt5g43410--1e-2At5g02502unknown proteinO.I.H.G.S.X.
0.1919.6Contig3622_s_atAt5g43410aleurone specific protein-2e-2At3g46900COPT2O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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