Co-expression analysis

Gene ID	1614676_s_at
Gene name	ATP synthase subunit a, chloroplastic
Homology with Arabidopsis	Similar to Atcg00120: - (HF=0)
Module size	7 genes
NF	0.76
%ile	96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.52	73.9	0.97	1614676_s_at	BQ793152	ATP synthase subunit a, chloroplastic	-	0	Atcg00120	-	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.97	1622247_at	CB001362	hypothetical protein LOC100244197	-	3e+0	At2g28800	ALB3 (ALBINO 3)	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.98	1609320_x_at	CF202708.1	-	-	2e-1	At4g28703	-	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.97	1618737_x_at	CF202021.1	-	-	1e+0	At4g09650	ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE)	O.I.	H.G.	S.X.	Please select
0.77	92.3	0.98	1611270_s_at	CF213958	-	-	1e-52	Atcg00070	-	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.97	1610347_s_at	CF202826.1	similar to NADH dehydrogenase subunit I	-	2e+0	At1g35430	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.97	1614348_at	CB340085	similar to NADH dehydrogenase subunit I	-	1e-157	Atcg01100	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	95.5	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2	94.9	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.5	91.9	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.2	89.9	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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