CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1614608_at

Gene name similar to protein transport protein Sec24, putative
Homology with Arabidopsis Similar to At3g07100: protein transport protein Sec24, putative (HF=4e-10)

Module size 6 genes

NF 0.67

%ile 92.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 92.3 0.99 1614608_at CF212155 similar to protein transport protein Sec24, putative - 4e-10 At3g07100 protein transport protein Sec24, putative O.I. H.G. S.X.
0.80 93.6 0.99 1613126_at CF214395 hypothetical protein LOC100232876 - 5e-35 At5g41950 binding O.I. H.G. S.X.
0.61 83.2 0.98 1620526_at BQ799509 hypothetical protein LOC100261578 - 1e-104 At1g54340 ICDH (ISOCITRATE DEHYDROGENASE) O.I. H.G. S.X.
0.60 81.9 0.98 1622793_at CB920514 hypothetical protein LOC100247146 /// hypothetical protein LOC100250759 - 3e-5 At2g17200 ubiquitin family protein O.I. H.G. S.X.
0.55 77.3 0.98 1609317_at AF243474.1 ethylene receptor-like - 5e-102 At1g66340 ETR1 (ETHYLENE RESPONSE 1) O.I. H.G. S.X.
0.40 57.7 0.99 1614557_s_at CF405834 hypothetical protein LOC100243157 - 3e-62 At2g03120 ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.5 95.7 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56
3.1 94.6 GSM436364 Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
2.6 92.5 GSM436420 V. riparia (VR, PI588259) SD, 13h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436425 V. riparia (VR, PI588259) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436426 V. riparia (VR, PI588259) SD, 13h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436416 V. riparia (VR, PI588259) SD, 13h 7 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436403 V. riparia (VR, PI588259) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436419 V. riparia (VR, PI588259) SD, 13h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g07100, orthologous to the query gene, 1614608_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At3g07100 819896 protein transport protein Sec24, putative F:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFBOPVA O.I. H.G. S.X.
0.67 81.6 At1g21630 838765 calcium-binding EF hand family protein F:calcium ion binding;P:unknown;C:cytosol, plasma membrane;BMOFPVA O.I. H.G. S.X.
0.67 81.6 At4g32640 829399 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:intracellular protein transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFOBPVA O.I. H.G. S.X.
0.57 73.8 At1g04140 839272 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:chloroplast;MBFOPA O.I. H.G. S.X.
0.57 73.8 At3g08850 820032 RAPTOR1 Encodes one of two Arabidopsis RAPTOR/KOG1 homologs. RAPTOR proteins are binding partners of the target of rapamycin kinase that is present in all eukaryotes and play a central role in the stimulation of cell growth and metabolism in response to nutrients. Mutants show embryo lethal phenotype which occurs at pre-globular stage. May interact with TOR kinase in a rapamycin like signaling pathway. Interacts with TOR and S6K1 in vivo. Overexpression of RAPTOR1 rendered the S6K1 osmotic stress insensitive. O.I. H.G. S.X.
0.52 67.4 At2g05170 815065 ATVPS11 Homologous to yeast VPS11. Forms a complex with VCL1 and AtVPS33. Involved in vacuolar biogenesis. O.I. H.G. S.X.
0.50 65.3 At3g10380 820201 SEC8 (SUBUNIT OF EXOCYST COMPLEX 8) Subunit of the Putative Arabidopsis Exocyst Complex O.I. H.G. S.X.
0.42 53.9 At4g14160 827055 transport protein, putative F:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFOP O.I. H.G. S.X.
0.33 38.1 At3g50590 824223 nucleotide binding F:nucleotide binding;P:biological_process unknown;C:plasma membrane;MBFOPV O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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