CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1614441_at

Gene name hypothetical protein LOC100264239
Homology with Arabidopsis Similar to At3g11180: oxidoreductase, 2OG-Fe(II) oxygenase family protein (HF=1e-3)

Module size 18 genes

NF 0.86

%ile 99.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.68 88.0 0.89 1614441_at BQ798241 hypothetical protein LOC100264239 - 1e-3 At3g11180 oxidoreductase, 2OG-Fe(II) oxygenase family protein O.I. H.G. S.X.
0.94 99.3 0.93 AFFX-Vvi-gapdh-3_at - - - O.I. H.G. S.X.
0.94 99.3 0.93 AFFX-Vvi-gapdh-3_c8_at - - - O.I. H.G. S.X.
0.94 99.3 0.93 1615814_at CB920915 hypothetical protein LOC100264789 - 0 At3g04120 GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) O.I. H.G. S.X.
0.94 99.3 0.93 AFFX-Vvi-gapdh-3_c5_at - - - O.I. H.G. S.X.
0.94 99.3 0.93 AFFX-Vvi-gapdh-3_c6_at - - - O.I. H.G. S.X.
0.94 99.3 0.93 AFFX-Vvi-gapdh-3_c3_at - - - O.I. H.G. S.X.
0.94 99.3 0.94 AFFX-Vvi-gapdh-3_c4_at - - - O.I. H.G. S.X.
0.94 99.3 0.94 AFFX-Vvi-gapdh-3_c2_at - - - O.I. H.G. S.X.
0.94 99.3 0.94 AFFX-Vvi-gapdh-3_c1_at - - - O.I. H.G. S.X.
0.91 98.8 0.91 AFFX-Vvi-gapdh-3_c7_at - - - O.I. H.G. S.X.
0.86 95.1 0.94 1613339_at AF305093.1 polygalacturonase inhibiting protein - 6e-4 At5g06860 PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1) O.I. H.G. S.X.
0.84 94.8 0.96 AFFX-Vvi-gapdh-M_at - - - O.I. H.G. S.X.
0.84 94.8 0.96 AFFX-Vvi-gapdh-5_at - - - O.I. H.G. S.X.
0.74 91.0 0.92 1614862_at BQ797749 hypothetical protein LOC100265103 - 1e-1 At2g30670 tropinone reductase, putative / tropine dehydrogenase, putative O.I. H.G. S.X.
0.71 89.5 0.93 1609793_at BQ792585 hypothetical protein LOC100245778 - 3e-1 At2g03800 GEK1 (GEKO1) O.I. H.G. S.X.
0.68 88.0 0.93 1620425_at CF414994 hypothetical protein LOC100260808 - 3e-10 At2g17850 - O.I. H.G. S.X.
0.67 87.9 0.93 1611445_at BQ796039 hypothetical protein LOC100246742 - 1e+0 At3g48070 protein binding / zinc ion binding O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.1 99.8 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
10.6 99.7 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.8 99.6 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.4 99.6 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.2 99.5 GSM299458 D_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.7 99.5 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.5 99.4 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.9 99.3 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.7 99.3 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.5 99.2 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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