Co-expression analysis

Gene ID	1614418_at
Gene name	flowering-related B-class MADS-box protein
Homology with Arabidopsis	Similar to At3g54340: AP3 (APETALA 3) (HF=9e-15)
Module size	6 genes
NF	0.79
%ile	97.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.99	1614418_at	CF414182	flowering-related B-class MADS-box protein	-	9e-15	At3g54340	AP3 (APETALA 3)	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.98	1621644_at	CB004591	-	-	3e-9	At3g23690	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.98	1612107_at	CF405996	hypothetical protein LOC100248597	-	6e+0	At5g18040	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.99	1614965_at	BQ792730	MADS-box protein 4	-	6e-36	At1g24260	SEP3 (SEPALLATA3)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	1611561_a_at	CD800254	hypothetical protein LOC100240998	-	2e-2	At4g36850	-	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.98	1608432_s_at	CB004591	hypothetical protein LOC100266054	-	3e-9	At3g23690	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.6	98.4	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.5	97.5	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436356	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM147682	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	11

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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