Co-expression analysis

Gene ID 1614412_s_at
Gene name hypothetical protein LOC100243985
Homology with ArabidopsisSimilar to At3g17160: unknown protein (HF=5e-1)
Module size 6 genes
NF 0.42
%ile 62.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5072.70.981614412_s_atCB971898hypothetical protein LOC100243985-5e-1At3g17160unknown proteinO.I.H.G.S.X.
0.6081.90.971616640_s_atCB969696hypothetical protein LOC100248388-7e-6At1g79260unknown proteinO.I.H.G.S.X.
0.4464.10.981619134_atCB971759--2e+0At5g53720RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.4464.10.981610423_s_atCB977222hypothetical protein LOC100250124-5e-6At2g02960zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3243.10.971611084_atCA816784--6e+0At3g26690ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13)O.I.H.G.S.X.
0.2734.00.971616786_atCB976754--1e+0At5g38386F-box family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6081.90.961606557_atCB976051similar to BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE); kinase-1e-9At4g33430BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE)O.I.H.G.S.X.
0.5980.60.971622267_atCF516149hypothetical protein LOC100250166-7e-2At1g09500cinnamyl-alcohol dehydrogenase family / CAD familyO.I.H.G.S.X.
0.5072.70.971617170_atCF403242hypothetical protein LOC100243828 /// hypothetical protein LOC100254631-7e-16At3g07370CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN)O.I.H.G.S.X.
0.5072.70.971611012_atCA816762hypothetical protein LOC100264980-4e-4At5g57580calmodulin-binding proteinO.I.H.G.S.X.
0.4260.10.971619005_atCF206493.1--3e-14At5g46410NLI interacting factor (NIF) family proteinO.I.H.G.S.X.
0.4057.70.961620565_atCF203272.1--3e-26At1g14360UTR3 (UDP-GALACTOSE TRANSPORTER 3)O.I.H.G.S.X.
0.4057.70.961617520_atCF512466hypothetical LOC100266987-3e-1At3g27570-O.I.H.G.S.X.
0.3650.70.961615755_s_atCF209492hypothetical protein LOC100258055-5e-9At2g47900AtTLP3 (TUBBY LIKE PROTEIN 3)O.I.H.G.S.X.
0.3345.70.961617349_atCF203026.1hypothetical protein LOC100264419-4e-1Atmg01020-O.I.H.G.S.X.
0.3345.70.961612501_atCB008614with no lysine kinase-2e+0At5g62050OXA1O.I.H.G.S.X.
0.3345.70.971612294_atCB979426hypothetical protein LOC100241933-1e+0At2g27370integral membrane family proteinO.I.H.G.S.X.
0.3345.70.971622183_atCD800964--4e-1At1g51330serpin-related / serine protease inhibitor-relatedO.I.H.G.S.X.
0.3345.70.971606676_atCF403737hypothetical protein LOC100245560-9e-2At1g05060unknown proteinO.I.H.G.S.X.
0.3243.10.961607148_s_atCF212503hypothetical protein LOC100246330 /// hypothetical protein LOC100266521-7e-3At2g27740unknown proteinO.I.H.G.S.X.
0.3243.10.971618048_atCF516513hypothetical protein LOC100264030-3e-11At1g64460phosphatidylinositol 3- and 4-kinase family proteinO.I.H.G.S.X.
0.3243.10.981615091_atCD801426hypothetical protein LOC100242289-2e-2At1g13770-O.I.H.G.S.X.
0.3141.30.971610277_atCF208016hypothetical protein LOC100257821-2e-1At1g17710phosphataseO.I.H.G.S.X.
0.3141.30.971619584_atCB009318hypothetical protein LOC100243877-2e-17At3g29280unknown proteinO.I.H.G.S.X.
0.3039.40.971616171_atBM437490hypothetical protein LOC100251471-3e-18At5g48380leucine-rich repeat family protein / protein kinase family proteinO.I.H.G.S.X.
0.2937.70.971616658_atCD801940--6e+0At5g01075beta-galactosidaseO.I.H.G.S.X.
0.2937.70.971618473_s_atCF403518hypothetical protein LOC100259836-1e+1At5g53710unknown proteinO.I.H.G.S.X.
0.2837.70.961616015_atCF607669hypothetical protein LOC100245251-2e+0At2g36450HRD (HARDY)O.I.H.G.S.X.
0.2734.00.961622827_atCF213249hypothetical protein LOC100245850-3e+0At2g41470unknown proteinO.I.H.G.S.X.
0.2734.00.961620077_atCB002067--2e+0At1g53345unknown proteinO.I.H.G.S.X.
0.2734.00.961606496_atCB979201--1e+0At3g47410unknown proteinO.I.H.G.S.X.
0.2734.00.961620886_atCB348410--1e-1At1g34780ATAPRL4 (APR-like 4)O.I.H.G.S.X.
0.2734.00.971614914_atCB003306--3e-1At4g21330DYT1 (DYSFUNCTIONAL TAPETUM 1)O.I.H.G.S.X.
0.2632.00.971616394_atCB344590hypothetical protein LOC100267852-1e+0At3g51830ATG5O.I.H.G.S.X.
0.2632.00.941621589_atCF516846--6e-15At5g56730peptidase M16 family protein / insulinase family proteinO.I.H.G.S.X.
0.2530.50.951607570_atCD799887--5e-2At1g49110unknown proteinO.I.H.G.S.X.
0.2530.50.961619334_atCF518775hypothetical protein LOC100246179-2e-13At3g50650scarecrow-like transcription factor 7 (SCL7)O.I.H.G.S.X.
0.2530.50.971616661_atCF209343--7e-9At3g22190IQD5 (IQ-domain 5)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.094.2GSM299462D_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.692.5GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436360Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436358Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436359Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436361Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436389V. riparia (VR, PI588259) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436354Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436363Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436390V. riparia (VR, PI588259) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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