CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1614412_s_at

Gene name hypothetical protein LOC100243985
Homology with Arabidopsis Similar to At3g17160: unknown protein (HF=5e-1)

Module size 6 genes

NF 0.42

%ile 62.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 72.7 0.98 1614412_s_at CB971898 hypothetical protein LOC100243985 - 5e-1 At3g17160 unknown protein O.I. H.G. S.X.
0.60 81.9 0.97 1616640_s_at CB969696 hypothetical protein LOC100248388 - 7e-6 At1g79260 unknown protein O.I. H.G. S.X.
0.44 64.1 0.98 1619134_at CB971759 - - 2e+0 At5g53720 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.44 64.1 0.98 1610423_s_at CB977222 hypothetical protein LOC100250124 - 5e-6 At2g02960 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.32 43.1 0.97 1611084_at CA816784 - - 6e+0 At3g26690 ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13) O.I. H.G. S.X.
0.27 34.0 0.97 1616786_at CB976754 - - 1e+0 At5g38386 F-box family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.50	72.7	0.98	1614412_s_at	CB971898	hypothetical protein LOC100243985	-	5e-1	At3g17160	unknown protein	O.I.	H.G.	S.X.
0.60	81.9	0.97	1616640_s_at	CB969696	hypothetical protein LOC100248388	-	7e-6	At1g79260	unknown protein	O.I.	H.G.	S.X.
0.44	64.1	0.98	1619134_at	CB971759	-	-	2e+0	At5g53720	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.44	64.1	0.98	1610423_s_at	CB977222	hypothetical protein LOC100250124	-	5e-6	At2g02960	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.32	43.1	0.97	1611084_at	CA816784	-	-	6e+0	At3g26690	ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13)	O.I.	H.G.	S.X.
0.27	34.0	0.97	1616786_at	CB976754	-	-	1e+0	At5g38386	F-box family protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.60	81.9	0.96	1606557_at	CB976051	similar to BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE); kinase	-	1e-9	At4g33430	BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE)	O.I.	H.G.	S.X.
0.59	80.6	0.97	1622267_at	CF516149	hypothetical protein LOC100250166	-	7e-2	At1g09500	cinnamyl-alcohol dehydrogenase family / CAD family	O.I.	H.G.	S.X.
0.50	72.7	0.97	1617170_at	CF403242	hypothetical protein LOC100243828 /// hypothetical protein LOC100254631	-	7e-16	At3g07370	CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN)	O.I.	H.G.	S.X.
0.50	72.7	0.97	1611012_at	CA816762	hypothetical protein LOC100264980	-	4e-4	At5g57580	calmodulin-binding protein	O.I.	H.G.	S.X.
0.42	60.1	0.97	1619005_at	CF206493.1	-	-	3e-14	At5g46410	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.
0.40	57.7	0.96	1620565_at	CF203272.1	-	-	3e-26	At1g14360	UTR3 (UDP-GALACTOSE TRANSPORTER 3)	O.I.	H.G.	S.X.
0.40	57.7	0.96	1617520_at	CF512466	hypothetical LOC100266987	-	3e-1	At3g27570	-	O.I.	H.G.	S.X.
0.36	50.7	0.96	1615755_s_at	CF209492	hypothetical protein LOC100258055	-	5e-9	At2g47900	AtTLP3 (TUBBY LIKE PROTEIN 3)	O.I.	H.G.	S.X.
0.33	45.7	0.96	1617349_at	CF203026.1	hypothetical protein LOC100264419	-	4e-1	Atmg01020	-	O.I.	H.G.	S.X.
0.33	45.7	0.96	1612501_at	CB008614	with no lysine kinase	-	2e+0	At5g62050	OXA1	O.I.	H.G.	S.X.
0.33	45.7	0.97	1612294_at	CB979426	hypothetical protein LOC100241933	-	1e+0	At2g27370	integral membrane family protein	O.I.	H.G.	S.X.
0.33	45.7	0.97	1622183_at	CD800964	-	-	4e-1	At1g51330	serpin-related / serine protease inhibitor-related	O.I.	H.G.	S.X.
0.33	45.7	0.97	1606676_at	CF403737	hypothetical protein LOC100245560	-	9e-2	At1g05060	unknown protein	O.I.	H.G.	S.X.
0.32	43.1	0.96	1607148_s_at	CF212503	hypothetical protein LOC100246330 /// hypothetical protein LOC100266521	-	7e-3	At2g27740	unknown protein	O.I.	H.G.	S.X.
0.32	43.1	0.97	1618048_at	CF516513	hypothetical protein LOC100264030	-	3e-11	At1g64460	phosphatidylinositol 3- and 4-kinase family protein	O.I.	H.G.	S.X.
0.32	43.1	0.98	1615091_at	CD801426	hypothetical protein LOC100242289	-	2e-2	At1g13770	-	O.I.	H.G.	S.X.
0.31	41.3	0.97	1610277_at	CF208016	hypothetical protein LOC100257821	-	2e-1	At1g17710	phosphatase	O.I.	H.G.	S.X.
0.31	41.3	0.97	1619584_at	CB009318	hypothetical protein LOC100243877	-	2e-17	At3g29280	unknown protein	O.I.	H.G.	S.X.
0.30	39.4	0.97	1616171_at	BM437490	hypothetical protein LOC100251471	-	3e-18	At5g48380	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.
0.29	37.7	0.97	1616658_at	CD801940	-	-	6e+0	At5g01075	beta-galactosidase	O.I.	H.G.	S.X.
0.29	37.7	0.97	1618473_s_at	CF403518	hypothetical protein LOC100259836	-	1e+1	At5g53710	unknown protein	O.I.	H.G.	S.X.
0.28	37.7	0.96	1616015_at	CF607669	hypothetical protein LOC100245251	-	2e+0	At2g36450	HRD (HARDY)	O.I.	H.G.	S.X.
0.27	34.0	0.96	1622827_at	CF213249	hypothetical protein LOC100245850	-	3e+0	At2g41470	unknown protein	O.I.	H.G.	S.X.
0.27	34.0	0.96	1620077_at	CB002067	-	-	2e+0	At1g53345	unknown protein	O.I.	H.G.	S.X.
0.27	34.0	0.96	1606496_at	CB979201	-	-	1e+0	At3g47410	unknown protein	O.I.	H.G.	S.X.
0.27	34.0	0.96	1620886_at	CB348410	-	-	1e-1	At1g34780	ATAPRL4 (APR-like 4)	O.I.	H.G.	S.X.
0.27	34.0	0.97	1614914_at	CB003306	-	-	3e-1	At4g21330	DYT1 (DYSFUNCTIONAL TAPETUM 1)	O.I.	H.G.	S.X.
0.26	32.0	0.97	1616394_at	CB344590	hypothetical protein LOC100267852	-	1e+0	At3g51830	ATG5	O.I.	H.G.	S.X.
0.26	32.0	0.94	1621589_at	CF516846	-	-	6e-15	At5g56730	peptidase M16 family protein / insulinase family protein	O.I.	H.G.	S.X.
0.25	30.5	0.95	1607570_at	CD799887	-	-	5e-2	At1g49110	unknown protein	O.I.	H.G.	S.X.
0.25	30.5	0.96	1619334_at	CF518775	hypothetical protein LOC100246179	-	2e-13	At3g50650	scarecrow-like transcription factor 7 (SCL7)	O.I.	H.G.	S.X.
0.25	30.5	0.97	1616661_at	CF209343	-	-	7e-9	At3g22190	IQD5 (IQ-domain 5)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.0 94.2 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6 92.5 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436360 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436359 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436361 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436363 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436390 V. riparia (VR, PI588259) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
3.0	94.2	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436361	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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Gene ID	1614412_s_at
Gene name	hypothetical protein LOC100243985
Homology with Arabidopsis	Similar to At3g17160: unknown protein (HF=5e-1)
Module size	6 genes
NF	0.42
%ile	62.6

Co-expression analysis

Gene ID 1614412_s_at Gene name hypothetical protein LOC100243985 Homology with ArabidopsisSimilar to At3g17160: unknown protein (HF=5e-1) Module size 6 genes NF 0.42 %ile 62.6

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID 1614412_s_at

Gene name hypothetical protein LOC100243985
Homology with Arabidopsis Similar to At3g17160: unknown protein (HF=5e-1)

Module size 6 genes

NF 0.42

%ile 62.6

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays