CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1614412_s_at

Gene name hypothetical protein LOC100243985
Homology with Arabidopsis Similar to At3g17160: unknown protein (HF=5e-1)

Module size 6 genes

NF 0.42

%ile 62.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 72.7 0.98 1614412_s_at CB971898 hypothetical protein LOC100243985 - 5e-1 At3g17160 unknown protein O.I. H.G. S.X.
0.60 81.9 0.97 1616640_s_at CB969696 hypothetical protein LOC100248388 - 7e-6 At1g79260 unknown protein O.I. H.G. S.X.
0.44 64.1 0.98 1619134_at CB971759 - - 2e+0 At5g53720 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.44 64.1 0.98 1610423_s_at CB977222 hypothetical protein LOC100250124 - 5e-6 At2g02960 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.32 43.1 0.97 1611084_at CA816784 - - 6e+0 At3g26690 ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13) O.I. H.G. S.X.
0.27 34.0 0.97 1616786_at CB976754 - - 1e+0 At5g38386 F-box family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.0 94.2 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6 92.5 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436360 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436359 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436361 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436363 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436390 V. riparia (VR, PI588259) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.4301.1.S1_s_at, orthologous to the query gene, 1614412_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.40 67.0 Ptp.4301.1.S1_s_at At3g17160 - - 6e-4 At2g22080 unknown protein O.I. H.G. S.X.
0.55 82.2 PtpAffx.15726.1.S1_at At3g17160 AP2/ERF domain-containing transcription factor - 3e-17 At4g36900 RAP2.10 (related to AP2 10) O.I. H.G. S.X.
0.50 78.6 PtpAffx.201760.1.S1_at At3g17160 hypothetical protein - 7e-33 At1g29400 AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5) O.I. H.G. S.X.
0.32 55.2 Ptp.7100.1.A1_s_at At3g17160 hypothetical protein - 1e-10 At3g63010 GID1B (GA INSENSITIVE DWARF1B) O.I. H.G. S.X.
0.23 40.5 PtpAffx.159087.1.S1_at At3g17160 hypothetical protein - 2e-21 At2g34040 apoptosis inhibitory 5 (API5) family protein O.I. H.G. S.X.
0.23 40.5 PtpAffx.216633.1.S1_x_at At3g17160 hypothetical protein - 8e-19 At2g44440 emsy N terminus domain-containing protein / ENT domain-containing protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage