Co-expression analysis

Gene ID 1614412_s_at
Gene name hypothetical protein LOC100243985
Homology with ArabidopsisSimilar to At3g17160: unknown protein (HF=5e-1)
Module size 6 genes
NF 0.42
%ile 62.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5072.70.981614412_s_atCB971898hypothetical protein LOC100243985-5e-1At3g17160unknown proteinO.I.H.G.S.X.
0.6081.90.971616640_s_atCB969696hypothetical protein LOC100248388-7e-6At1g79260unknown proteinO.I.H.G.S.X.
0.4464.10.981619134_atCB971759--2e+0At5g53720RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.4464.10.981610423_s_atCB977222hypothetical protein LOC100250124-5e-6At2g02960zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3243.10.971611084_atCA816784--6e+0At3g26690ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13)O.I.H.G.S.X.
0.2734.00.971616786_atCB976754--1e+0At5g38386F-box family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.094.2GSM299462D_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.692.5GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436360Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436358Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436359Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436361Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436389V. riparia (VR, PI588259) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436354Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436363Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436390V. riparia (VR, PI588259) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, HVSMEf0019G16r2_at, orthologous to the query gene, 1614412_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6784.7HVSMEf0019G16r2_atAt3g17160--1e+0At1g07750cupin family proteinO.I.H.G.S.X.
0.6178.7Contig22384_atAt3g17160--6e+0At2g34290protein kinase family proteinO.I.H.G.S.X.
0.5572.0Contig19621_atAt3g17160--1e-3At1g09570PHYA (PHYTOCHROME A)O.I.H.G.S.X.
0.5066.9Contig8758_atAt3g17160--4e-41At1g71220EBS1 (EMS-mutagenized bri1 suppressor 1)O.I.H.G.S.X.
0.5066.9Contig11001_atAt3g17160--3e-5At4g35450AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2)O.I.H.G.S.X.
0.3647.1Contig19280_atAt3g17160--5e+0At1g16240SYP51 (SYNTAXIN OF PLANTS 51)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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