Co-expression analysis

Gene ID	1614412_s_at
Gene name	hypothetical protein LOC100243985
Homology with Arabidopsis	Similar to At3g17160: unknown protein (HF=5e-1)
Module size	6 genes
NF	0.42
%ile	62.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.7	0.98	1614412_s_at	CB971898	hypothetical protein LOC100243985	-	5e-1	At3g17160	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.97	1616640_s_at	CB969696	hypothetical protein LOC100248388	-	7e-6	At1g79260	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1619134_at	CB971759	-	-	2e+0	At5g53720	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1610423_s_at	CB977222	hypothetical protein LOC100250124	-	5e-6	At2g02960	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.97	1611084_at	CA816784	-	-	6e+0	At3g26690	ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13)	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.97	1616786_at	CB976754	-	-	1e+0	At5g38386	F-box family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	94.2	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436361	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the soybean gene, Gma.11933.1.S1_s_at, orthologous to the query gene, 1614412_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	91.5	Gma.11933.1.S1_s_at	At3g17160	-	-	1e+0	At5g19190	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.41064.1.S1_at	At3g17160	-	-	5e-8	At3g02590	delta 7-sterol-C5-desaturase, putative	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.92359.1.S1_s_at	At3g17160	HMG-1 like protein gene	-	5e-6	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	O.I.	H.G.	S.X.	Please select
0.17	21.2	GmaAffx.9561.1.S1_x_at	At3g17160	-	-	4e-15	At4g40040	histone H3.2	O.I.	H.G.	S.X.	Please select
0.09	12.0	GmaAffx.81052.2.S1_at	At3g17160	-	-	6e-39	At3g58500	PP2A-3 (PROTEIN PHOSPHATASE 2A-3)	O.I.	H.G.	S.X.	Please select
0.05	8.0	Gma.13580.2.S1_a_at	At3g17160	tubulin A	-	3e-139	At1g50010	TUA2	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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