Co-expression analysis

Gene ID 1614412_s_at
Gene name hypothetical protein LOC100243985
Homology with ArabidopsisSimilar to At3g17160: unknown protein (HF=5e-1)
Module size 6 genes
NF 0.42
%ile 62.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5072.70.981614412_s_atCB971898hypothetical protein LOC100243985-5e-1At3g17160unknown proteinO.I.H.G.S.X.
0.6081.90.971616640_s_atCB969696hypothetical protein LOC100248388-7e-6At1g79260unknown proteinO.I.H.G.S.X.
0.4464.10.981619134_atCB971759--2e+0At5g53720RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.4464.10.981610423_s_atCB977222hypothetical protein LOC100250124-5e-6At2g02960zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3243.10.971611084_atCA816784--6e+0At3g26690ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13)O.I.H.G.S.X.
0.2734.00.971616786_atCB976754--1e+0At5g38386F-box family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.094.2GSM299462D_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.692.5GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436360Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436358Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436359Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436361Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436389V. riparia (VR, PI588259) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436354Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436363Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436390V. riparia (VR, PI588259) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g17160, orthologous to the query gene, 1614412_s_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.5974.7At3g17160820973unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAO.I.H.G.S.X.
0.8491.9At2g25650817106DNA-binding storekeeper protein-relatedF:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVAO.I.H.G.S.X.
0.8190.4At1g15200838086protein-protein interaction regulator family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.7989.1At5g60030836125unknown proteinF:unknown;P:unknown;C:unknown;MOFBPVAO.I.H.G.S.X.
0.7486.1At1g15940838164bindingF:binding;P:biological_process unknown;C:unknown;MOBFPVAO.I.H.G.S.X.
0.7486.1At3g07780819969OBE1 (OBERON1)Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems.O.I.H.G.S.X.
0.7486.1At1g65440842855GTB1Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly.O.I.H.G.S.X.
0.7184.2At2g27470817292NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11)F:transcription factor activity;P:regulation of transcription;C:intracellular;OMFBPVAO.I.H.G.S.X.
0.6781.6At2g40650818660pre-mRNA splicing factor PRP38 family proteinF:binding;P:RNA processing;C:cellular_component unknown;MBOFPVAO.I.H.G.S.X.
0.6478.9At1g28420839740HB-1 (homeobox-1)F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVAO.I.H.G.S.X.
0.6075.7At3g50690824233leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.5974.7At1g47970841215unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVAO.I.H.G.S.X.
0.5773.8At2g39260818511RNA binding / binding / protein bindingF:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.5773.8At5g19900832112PRLI-interacting factor, putativeF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFPBVAO.I.H.G.S.X.
0.4862.5At3g02760820930ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide bindingF:histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:chloroplast, cytoplasm;OBMFAPO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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