Co-expression analysis

Gene ID	1614347_at
Gene name	hypothetical protein LOC100250375
Homology with Arabidopsis	Similar to At4g20290: unknown protein (HF=1e-1)
Module size	7 genes
NF	0.39
%ile	57.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	0.94	1614347_at	CF513585	hypothetical protein LOC100250375	-	1e-1	At4g20290	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.94	1608576_at	CF517202	hypothetical protein LOC100248637	-	4e+0	At5g53310	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.94	1610450_at	CD717368	-	-	1e+0	At1g76955	Expressed protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.94	1617834_at	CF403807	-	-	1e+0	At2g18200	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.94	1619999_at	CD799397	hypothetical protein LOC100261404	-	8e-1	At5g01712	CPuORF48 (Conserved peptide upstream open reading frame 48)	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.94	1612668_at	CF519076	hypothetical protein LOC100266959	-	1e+0	At3g26616	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.94	1616839_at	CF203703.1	-	-	1e-1	At5g67110	ALC (ALCATRAZ)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.3	90.7	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.8	86.0	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage