Co-expression analysis

Gene ID	1614242_at
Gene name	hypothetical protein LOC100243579
Homology with Arabidopsis	Similar to At5g60800: heavy-metal-associated domain-containing protein (HF=1e-1)
Module size	6 genes
NF	0.22
%ile	31.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.5	0.98	1614242_at	CF211976	hypothetical protein LOC100243579	-	1e-1	At5g60800	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.98	1612757_at	CD801743	hypothetical protein LOC100241266	-	1e+0	At2g32560	F-box family protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.98	1613084_at	CB979577	hypothetical protein LOC100261680	-	5e-7	At5g46190	KH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.98	1618602_at	CD712496	hypothetical protein LOC100267246	-	4e-7	At1g79650	RAD23	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.98	1606771_at	CF517362	-	-	3e-39	At4g00660	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.98	1614339_at	CF208988	hypothetical protein LOC100242639	-	1e+0	At1g27300	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.5	99.8	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
6.9	99.1	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.8	97.8	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
4.7	97.7	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
3.8	96.4	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.7	96.2	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.2	94.9	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
3.1	94.6	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
2.4	91.3	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.2	89.9	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage