Co-expression analysis

Gene ID	1614194_at
Gene name
Homology with Arabidopsis	Similar to At3g18790: - (HF=8e-18)
Module size	6 genes
NF	0.11
%ile	19.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.93	1614194_at	CA808916	-	-	8e-18	At3g18790	-	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.98	AFFX-r2-P1-cre-5_at		-	-			-	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.98	AFFX-Vvi-X03453-2_s_at		-	-			-	O.I.	H.G.	S.X.	Please select
0.08	8.5	0.97	1618769_at	CF214762	similar to AT4g27960	-	1e-72	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.97	1615073_at	CD798908	GAGA-binding transcriptional activator BBR/BPC6-like	-	1e-40	At5g42520	ATBPC6	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.98	1620798_s_at	BQ800340	hypothetical protein LOC100251175	-	1e-5	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	98.7	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
4.3	97.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
3.7	96.2	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.3	95.2	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.8	93.4	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM147680	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	9
2.6	92.5	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
2.6	92.5	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.2	89.9	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.53822.1.S1_at, orthologous to the query gene, 1614194_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	PtpAffx.53822.1.S1_at	At3g18790	-	-	3e-12	At5g64813	LIP1 (Light Insensitive Period1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.221204.1.S1_at	At3g18790	hypothetical protein	-	4e-4	At4g37280	MRG family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.85164.1.S1_at	At3g18790	hypothetical protein	-	1e-2	At1g22140	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.114732.2.A1_a_at	At3g18790	hypothetical protein	-	2e-1	At1g76065	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.3207.5.S1_at	At3g18790	-	-	6e-3	At1g29810	dehydratase family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.203886.1.S1_at	At3g18790	hypothetical protein	-	3e-5	At1g28250	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.12425.1.S1_at	At3g18790	hypothetical protein	-	7e-34	At2g46580	pyridoxine 5'-phosphate oxidase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	Ptp.249.1.S1_at	At3g18790	hypothetical protein	-	2e-51	At3g04240	SEC (secret agent)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.88561.1.A1_at	At3g18790	-	-	7e-1	At5g25560	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.216961.1.S1_s_at	At3g18790	hypothetical protein	-	5e-19	At5g19460	atnudt20 (Arabidopsis thaliana Nudix hydrolase homolog 20)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.208504.1.S1_s_at	At3g18790	hypothetical protein	-	7e+0	At5g63240	glycosyl hydrolase family protein 17	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.1093.1.S1_at	At3g18790	hypothetical protein	-	6e-93	At1g09630	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.204470.1.S1_at	At3g18790	tRNA isopentenyltransferase	-	3e-6	At2g27760	ATIPT2 (TRNA ISOPENTENYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.249.450.S1_a_at	At3g18790	hypothetical protein	-	1e+0	At1g52590	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.118580.1.S1_a_at	At3g18790	hypothetical protein	-	1e-20	At3g15080	exonuclease family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.12425.1.S1_s_at	At3g18790	hypothetical protein	-	7e-34	At2g46580	pyridoxine 5'-phosphate oxidase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.206181.1.S1_at	At3g18790	hypothetical protein	-	2e-18	At3g28430	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.43487.1.A1_a_at	At3g18790	-	-	1e+0	At5g38570	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.80038.2.A1_a_at	At3g18790	hypothetical protein	-	3e-1	At5g40860	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.37924.1.A1_s_at	At3g18790	hypothetical protein	-	1e-16	At5g02250	EMB2730 (EMBRYO DEFECTIVE 2730)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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