CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1614194_at

Gene name
Homology with Arabidopsis Similar to At3g18790: - (HF=8e-18)

Module size 6 genes

NF 0.11

%ile 19.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.93 1614194_at CA808916 - - 8e-18 At3g18790 - O.I. H.G. S.X.
0.15 15.6 0.98 AFFX-r2-P1-cre-5_at - - - O.I. H.G. S.X.
0.15 15.6 0.98 AFFX-Vvi-X03453-2_s_at - - - O.I. H.G. S.X.
0.08 8.5 0.97 1618769_at CF214762 similar to AT4g27960 - 1e-72 At5g41700 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) O.I. H.G. S.X.
0.07 7.8 0.97 1615073_at CD798908 GAGA-binding transcriptional activator BBR/BPC6-like - 1e-40 At5g42520 ATBPC6 O.I. H.G. S.X.
0.05 6.0 0.98 1620798_s_at BQ800340 hypothetical protein LOC100251175 - 1e-5 At3g16640 TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.1 98.7 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
4.3 97.2 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
3.7 96.2 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.3 95.2 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.8 93.4 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.7 93.0 GSM322370 genotype: Incrocio Manzoni - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.6 92.5 GSM147680 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 9
2.6 92.5 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
2.6 92.5 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
2.2 89.9 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72

Inter-species module comparison

A co-expression module including the rice gene, Os02g0602500, orthologous to the query gene, 1614194_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os02g0602500 At3g18790 - Isy1-like splicing family protein 5e-8 At3g18790 - O.I. H.G. S.X.
0.50 68.0 Os01g0209000 At3g18790 - Alg9-like mannosyltransferase family protein 2e-14 At1g16900 sugar binding / transferase, transferring glycosyl groups O.I. H.G. S.X.
0.47 62.3 Os02g0495900 At3g18790 - Conserved hypothetical protein 1e+0 At3g01990 ACR6 O.I. H.G. S.X.
0.33 38.8 Os08g0567200 At3g18790 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 3e+0 At5g47700 60S acidic ribosomal protein P1 (RPP1C) O.I. H.G. S.X.
0.26 25.6 Os01g0727400 At3g18790 - Conserved hypothetical protein 6e-16 At1g72420 - O.I. H.G. S.X.
0.15 10.3 Os04g0533000 At3g18790 - ATP-dependent RNA helicase p54 (Xp54) 9e-63 At4g00660 DEAD/DEAH box helicase, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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