Co-expression analysis

Gene ID 1614194_at
Gene name
Homology with ArabidopsisSimilar to At3g18790: - (HF=8e-18)
Module size 6 genes
NF 0.11
%ile 19.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.931614194_atCA808916--8e-18At3g18790-O.I.H.G.S.X.
0.1515.60.98AFFX-r2-P1-cre-5_at---O.I.H.G.S.X.
0.1515.60.98AFFX-Vvi-X03453-2_s_at---O.I.H.G.S.X.
0.088.50.971618769_atCF214762similar to AT4g27960-1e-72At5g41700UBC8 (UBIQUITIN CONJUGATING ENZYME 8)O.I.H.G.S.X.
0.077.80.971615073_atCD798908GAGA-binding transcriptional activator BBR/BPC6-like-1e-40At5g42520ATBPC6O.I.H.G.S.X.
0.056.00.981620798_s_atBQ800340hypothetical protein LOC100251175-1e-5At3g16640TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.198.7GSM147735Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation64Link to GEO
4.397.2GSM147717Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation46Link to GEO
3.796.2GSM322362genotype: Chardonnay - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.395.2GSM322363genotype: Chardonnay - disease type: Bois Noir infected - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.893.4GSM322369genotype: Incrocio Manzoni - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.793.0GSM322370genotype: Incrocio Manzoni - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.692.5GSM147680Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation9Link to GEO
2.692.5GSM147716Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation45Link to GEO
2.692.5GSM147741Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation70Link to GEO
2.289.9GSM147743Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation72Link to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig17681_at, orthologous to the query gene, 1614194_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8394.0Contig17681_atAt3g18790--1e-3At3g18790-O.I.H.G.S.X.
0.5066.9Contig8362_atAt3g18790--9e+0At5g54500FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)O.I.H.G.S.X.
0.5066.9Contig314_atAt3g18790--6e-23At5g46180delta-OATO.I.H.G.S.X.
0.4458.9Contig1938_s_atAt3g18790--2e-49At4g1739060S ribosomal protein L15 (RPL15B)O.I.H.G.S.X.
0.3647.1rbaal8a22_atAt3g18790--2e+0At1g75690chaperone protein dnaJ-relatedO.I.H.G.S.X.
0.3647.1HVSMEa0006D13r2_atAt3g18790--5e-1At5g42190ASK2 (ARABIDOPSIS SKP1-LIKE 2)O.I.H.G.S.X.
0.086.5Contig1128_x_atAt3g18790--9e-8At3g09480histone H2B, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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