Co-expression analysis

Gene ID	1614194_at
Gene name
Homology with Arabidopsis	Similar to At3g18790: - (HF=8e-18)
Module size	6 genes
NF	0.11
%ile	19.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.93	1614194_at	CA808916	-	-	8e-18	At3g18790	-	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.98	AFFX-r2-P1-cre-5_at		-	-			-	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.98	AFFX-Vvi-X03453-2_s_at		-	-			-	O.I.	H.G.	S.X.	Please select
0.08	8.5	0.97	1618769_at	CF214762	similar to AT4g27960	-	1e-72	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.97	1615073_at	CD798908	GAGA-binding transcriptional activator BBR/BPC6-like	-	1e-40	At5g42520	ATBPC6	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.98	1620798_s_at	BQ800340	hypothetical protein LOC100251175	-	1e-5	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	98.7	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
4.3	97.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
3.7	96.2	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.3	95.2	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.8	93.4	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM147680	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	9
2.6	92.5	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
2.6	92.5	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.2	89.9	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.55466.1.S1_at, orthologous to the query gene, 1614194_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.9	GmaAffx.55466.1.S1_at	At3g18790	-	-	1e-15	At3g18790	-	O.I.	H.G.	S.X.	Please select
0.52	73.1	Gma.16338.1.S1_at	At3g18790	-	-	6e-31	At2g29190	APUM2 (Arabidopsis Pumilio 2)	O.I.	H.G.	S.X.	Please select
0.45	63.9	GmaAffx.82412.1.S1_at	At3g18790	-	-	1e+1	At2g30032	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	GmaAffx.77090.1.S1_at	At3g18790	-	-	6e-1	At1g29970	RPL18AA (60S RIBOSOMAL PROTEIN L18A-1)	O.I.	H.G.	S.X.	Please select
0.43	60.6	GmaAffx.12718.1.S1_at	At3g18790	-	-	4e-1	At1g20470	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.41	58.1	Gma.2417.1.S1_at	At3g18790	-	-	1e+0	At3g15760	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.17284.1.A1_at	At3g18790	-	-	4e-2	At1g51450	SPla/RYanodine receptor (SPRY) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	Gma.1538.1.S1_a_at	At3g18790	-	-	2e-6	At1g11650	RNA-binding protein 45 (RBP45), putative	O.I.	H.G.	S.X.	Please select
0.35	48.6	Gma.15476.1.S1_x_at	At3g18790	-	-	1e-56	At3g52580	40S ribosomal protein S14 (RPS14C)	O.I.	H.G.	S.X.	Please select
0.35	48.6	GmaAffx.25379.2.S1_at	At3g18790	-	-	3e+0	At2g26370	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.6474.1.A1_s_at	At3g18790	-	-	6e-2	At2g28700	AGL46 (AGAMOUS-LIKE 46)	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.17865.1.A1_at	At3g18790	-	-	3e-7	At3g53110	LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4)	O.I.	H.G.	S.X.	Please select
0.32	43.7	Gma.15745.1.A1_s_at	At3g18790	-	-	1e+1	At5g06450	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.9610.1.S1_at	At3g18790	-	-	3e+0	At5g18110	NCBP (NOVEL CAP-BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.27	35.7	Gma.17588.3.S1_at	At3g18790	-	-	1e-59	At1g80490	TPR1 (TOPLESS-RELATED 1)	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.13137.1.S1_at	At3g18790	-	-	9e-7	At1g60070	binding / clathrin binding / protein binding / protein transporter	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.7431.1.S1_at	At3g18790	-	-	2e-15	At3g11710	ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1)	O.I.	H.G.	S.X.	Please select
0.22	28.1	Gma.1437.1.S1_at	At3g18790	-	-	3e-12	At4g34110	PAB2 (POLY(A) BINDING 2)	O.I.	H.G.	S.X.	Please select
0.20	25.1	Gma.1538.2.A1_at	At3g18790	-	-	2e-5	At4g27000	ATRBP45C	O.I.	H.G.	S.X.	Please select
0.20	25.1	GmaAffx.75093.1.A1_s_at	At3g18790	-	-	1e+1	At5g65640	bHLH093 (beta HLH protein 93)	O.I.	H.G.	S.X.	Please select
0.19	23.7	Gma.3109.1.A1_at	At3g18790	-	-	3e+0	At2g46090	diacylglycerol kinase family protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	GmaAffx.46220.1.S1_at	At3g18790	-	-	1e-29	At5g03470	ATB' ALPHA	O.I.	H.G.	S.X.	Please select
0.17	21.2	Gma.4039.1.S1_at	At3g18790	-	-	3e-18	At5g20890	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.15	18.7	GmaAffx.65750.1.S1_at	At3g18790	-	-	3e+0	At5g36001	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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