CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1614194_at

Gene name
Homology with Arabidopsis Similar to At3g18790: - (HF=8e-18)

Module size 6 genes

NF 0.11

%ile 19.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.93 1614194_at CA808916 - - 8e-18 At3g18790 - O.I. H.G. S.X.
0.15 15.6 0.98 AFFX-r2-P1-cre-5_at - - - O.I. H.G. S.X.
0.15 15.6 0.98 AFFX-Vvi-X03453-2_s_at - - - O.I. H.G. S.X.
0.08 8.5 0.97 1618769_at CF214762 similar to AT4g27960 - 1e-72 At5g41700 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) O.I. H.G. S.X.
0.07 7.8 0.97 1615073_at CD798908 GAGA-binding transcriptional activator BBR/BPC6-like - 1e-40 At5g42520 ATBPC6 O.I. H.G. S.X.
0.05 6.0 0.98 1620798_s_at BQ800340 hypothetical protein LOC100251175 - 1e-5 At3g16640 TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.1 98.7 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
4.3 97.2 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
3.7 96.2 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.3 95.2 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.8 93.4 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.7 93.0 GSM322370 genotype: Incrocio Manzoni - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.6 92.5 GSM147680 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 9
2.6 92.5 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
2.6 92.5 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
2.2 89.9 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g18790, orthologous to the query gene, 1614194_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.44 57.2 At3g18790 821412 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFPBVA O.I. H.G. S.X.
0.77 88.0 At5g65720 836701 NFS1 cysteine desulfurase whose activity is dependent on AtSufE activation. O.I. H.G. S.X.
0.67 81.6 At2g19480 816467 NAP1 This gene is predicted to encode a nucleosome assembly protein. Plant lines expressing an RNAi construct directed against this gene show a reduction in agrobacterium-mediated root transformation. O.I. H.G. S.X.
0.55 70.6 At1g28350 839731 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / tyrosine-tRNA ligase F:tyrosine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:translation, tyrosyl-tRNA aminoacylation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMAFPV O.I. H.G. S.X.
0.53 68.6 At5g18230 831941 transcription regulator NOT2/NOT3/NOT5 family protein F:transcription regulator activity;P:negative regulation of transcription, regulation of transcription;C:nucleus;MOFBPVA O.I. H.G. S.X.
0.36 43.6 At5g53000 835379 TAP46 (2A phosphatase associated protein of 46 kD) PP2A-associated protein with a possible function in the chilling response O.I. H.G. S.X.
0.32 35.7 At1g48900 841312 signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) F:7S RNA binding, mRNA binding, nucleoside-triphosphatase activity, GTP binding, nucleotide binding;P:SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition, SRP-dependent cotranslational protein targeting to membrane;C:signal recognition particle, signal recognition particle, endoplasmic reticulum targeting;BOAMFP O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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