CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1614138_at

Gene name hypothetical protein LOC100254839
Homology with Arabidopsis Similar to At1g68590: plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative (HF=3e-14)

Module size 6 genes

NF 0.86

%ile 99.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.99 1614138_at CA815957 hypothetical protein LOC100254839 - 3e-14 At1g68590 plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative O.I. H.G. S.X.
0.80 93.6 0.99 1608691_at CB345817 hypothetical protein LOC100248623 - 6e-27 At1g78630 emb1473 (embryo defective 1473) O.I. H.G. S.X.
0.80 93.6 0.99 1621569_at CD801894 hypothetical protein LOC100257626 - 4e-7 At3g27850 RPL12-C (ribosomal protein l12-c) O.I. H.G. S.X.
0.80 93.6 0.99 1616390_at CF211469 hypothetical protein LOC100248042 - 1e-41 At3g13120 30S ribosomal protein S10, chloroplast, putative O.I. H.G. S.X.
0.71 89.5 0.99 1620854_at CA818411 hypothetical protein LOC100258321 - 7e-12 At1g29070 ribosomal protein L34 family protein O.I. H.G. S.X.
0.67 87.9 0.99 1610155_at CF210468 hypothetical protein LOC100263834 - 2e-25 At1g16080 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.9 97.9 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.8 97.8 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.5 97.5 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.4 95.5 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9 93.8 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56
2.9 93.8 GSM322370 genotype: Incrocio Manzoni - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.8 93.4 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7 93.0 GSM287885 Green soft berry A22 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.4 91.3 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.3 90.7 GSM287882 Green soft berry A21 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the wheat gene, Ta.17328.1.S1_at, orthologous to the query gene, 1614138_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 Ta.17328.1.S1_at At1g68590 - - 2e+0 At4g35987 unknown protein O.I. H.G. S.X.
0.40 58.4 Ta.28734.1.S1_x_at At1g68590 glycine-rich RNA-binding protein - 6e-35 At1g07930 elongation factor 1-alpha / EF-1-alpha O.I. H.G. S.X.
0.21 25.5 Ta.2592.2.S1_s_at At1g68590 - - 6e+0 At4g19270 unknown protein O.I. H.G. S.X.
0.15 17.1 Ta.2669.1.S1_a_at At1g68590 - - 3e-13 At4g35300 TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2) O.I. H.G. S.X.
0.03 4.7 Ta.14126.1.S1_at At1g68590 - - 5e-4 At1g15270 - O.I. H.G. S.X.
0.00 0.7 Ta.21119.1.S1_a_at At1g68590 - - 3e-3 At3g63000 NPL41 (NPL4-LIKE PROTEIN 1) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays

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