Co-expression analysis

Gene ID	1614120_at
Gene name
Homology with Arabidopsis	Similar to At5g40550: unknown protein (HF=4e-3)
Module size	7 genes
NF	0.56
%ile	83.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	0.98	1614120_at	CB349861	-	-	4e-3	At5g40550	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.98	1619122_s_at	CF515522	hypothetical protein LOC100244610	-	3e-26	At5g38470	DNA repair protein RAD23, putative	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.98	1613621_s_at	CD721086	hypothetical protein LOC100246359	-	3e-1	At5g58412	-	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.98	1609942_at	CF210968	hypothetical protein LOC100262467	-	5e+0	At5g67580	TRB2	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.98	1611974_at	CF208396	hypothetical protein LOC100258926	-	9e-27	At2g15430	NRPB3	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.99	1613208_at	CF209522	hypothetical protein LOC100267894	-	8e-38	At1g16610	SR45	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.99	1606807_at	BQ794559	hypothetical protein LOC100264697	-	7e-21	At5g11710	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	95.2	GSM147732	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	61
3.0	94.2	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436385	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28
2.5	91.9	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.4	91.3	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.3	90.7	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.98056.1.A1_at, orthologous to the query gene, 1614120_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	98.9	TaAffx.98056.1.A1_at	At5g40550	-	-	9e-1	At5g55200	co-chaperone grpE protein, putative	O.I.	H.G.	S.X.	Please select
0.54	75.5	Ta.10893.1.S1_at	At5g40550	-	-	7e-1	At5g28610	-	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.12949.2.A1_a_at	At5g40550	-	-	3e+0	At5g21950	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.3817.1.S1_at	At5g40550	-	-	5e-13	At5g53140	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.21483.1.S1_s_at	At5g40550	-	-	9e-1	At1g06420	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.12481.1.S1_at	At5g40550	-	-	2e+0	At4g30620	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.25393.1.S1_at	At5g40550	-	-	1e+0	At5g39365	-	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.9307.2.A1_x_at	At5g40550	-	-	5e-7	At3g24360	enoyl-CoA hydratase/isomerase family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.30595.1.S1_at	At5g40550	-	-	4e+0	At5g38800	AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43)	O.I.	H.G.	S.X.	Please select
0.22	27.1	TaAffx.22520.1.A1_at	At5g40550	-	-	9e+0	At5g55990	CBL2 (CALCINEURIN B-LIKE 2)	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.10514.1.S1_a_at	At5g40550	-	-	5e+0	At3g06730	thioredoxin family protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.8606.1.S1_at	At5g40550	-	-	4e-2	At3g18850	LPAT5	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.12222.1.S1_at	At5g40550	-	-	2e-1	At5g46250	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.2988.1.A1_at	At5g40550	-	-	1e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.26261.1.A1_at	At5g40550	-	-	5e-1	At5g06480	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	Ta.30680.1.S1_a_at	At5g40550	-	-	3e-23	At5g55310	TOP1BETA (DNA TOPOISOMERASE 1 BETA)	O.I.	H.G.	S.X.	Please select
0.13	14.6	Ta.3082.2.A1_a_at	At5g40550	-	-	4e+0	At3g61990	O-methyltransferase family 3 protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	Ta.27987.1.S1_at	At5g40550	-	-	2e+0	At2g01100	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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