Co-expression analysis

Gene ID	1613997_at
Gene name	hypothetical protein LOC100246545
Homology with Arabidopsis	Similar to At3g57330: ACA11 (autoinhibited Ca2+-ATPase 11) (HF=3e-13)
Module size	28 genes
NF	0.38
%ile	56.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	0.92	1613997_at	CB970314	hypothetical protein LOC100246545	-	3e-13	At3g57330	ACA11 (autoinhibited Ca2+-ATPase 11)	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.96	1615791_s_at	CA809329	hypothetical protein LOC100260183	-	2e-37	At2g45990	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	69.3	0.97	1615874_at	CF403960	hypothetical protein LOC100244966	-	2e-127	At1g07110	F2KP (FRUCTOSE-2,6-BISPHOSPHATASE)	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.97	1615149_at	CD009120	hypothetical protein LOC100248175	-	4e+0	At5g64200	ATSC35	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.95	1617180_s_at	CA814162	hypothetical protein LOC100247137	-	2e-33	At3g56240	CCH (COPPER CHAPERONE)	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.94	1606993_at	CB970398	-	-	4e+0	At5g09820	plastid-lipid associated protein PAP / fibrillin family protein	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.97	1614231_s_at	CB970079	hypothetical protein LOC100245250	-	3e-5	At3g15360	TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4)	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.97	1611605_s_at	CF371905	hypothetical protein LOC100257686	-	2e-3	At2g31050	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.97	1607276_at	CF202469.1	-	-	1e-13	At3g23400	plastid-lipid associated protein PAP / fibrillin family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.96	1606809_at	CF207836	hypothetical protein LOC100250094	-	7e-5	At5g60750	CAAX amino terminal protease family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.96	1613726_at	CF205820.1	-	-	4e-13	At4g15110	CYP97B3	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.97	1607055_at	CB004334	hypothetical protein LOC100264430	-	2e-2	At1g44790	ChaC-like family protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.96	1610176_at	CB341974	hypothetical protein LOC100266842	-	9e-16	At4g36810	GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.97	1617988_at	CA817224	hypothetical protein LOC100243747	-	2e-4	At2g35410	33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.96	1611247_s_at	CF206748.1	similar to cytochrome f	-	2e+0	At1g65490	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.96	1617645_s_at	CA818763	hypothetical protein LOC100257292	-	2e-96	At5g46110	APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.97	1613691_s_at	CF511746	hypothetical protein LOC100254533	-	5e-35	At2g05100	LHCB2.1	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.96	1613581_at	CB981734	hypothetical protein LOC100262899	-	1e-17	At3g17800	-	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.95	1607964_s_at	BM437259	hypothetical protein LOC100257686	-	4e-1	At5g08410	FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2)	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.97	1609160_at	CF215744	hypothetical protein LOC100257877	-	2e-28	At5g47110	lil3 protein, putative	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.96	1616588_at	BQ792380	hypothetical protein LOC100268155	-	2e-20	At2g25870	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.97	1620133_at	CA816897	hypothetical protein LOC100256241	-	3e-2	At4g13220	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.97	1610544_s_at	CB002886	hypothetical protein LOC100246662	-	1e-25	At4g01150	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.97	1611683_s_at	BQ799199	similar to A_IG002N01.31 gene product	-	1e-30	At4g01050	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.97	1614898_at	CF512424	hypothetical protein LOC100246217	-	4e-12	At1g08490	CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE)	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.96	1610065_at	CF373155	hypothetical protein LOC100260744	-	3e-1	At4g09775	-	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.97	1620011_at	CA809496	O-acetylserine(thiol)-lyase	-	9e-27	At3g59760	OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C)	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.96	1613891_at	BQ797483	hypothetical protein LOC100251254	-	6e-32	At1g12640	membrane bound O-acyl transferase (MBOAT) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.7	93.0	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.2	89.9	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.0	88.2	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
1.9	87.2	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage