Co-expression analysis

Gene ID	1613994_at
Gene name	hypothetical protein LOC100260766
Homology with Arabidopsis	Similar to At2g31090: unknown protein (HF=6e-21)
Module size	11 genes
NF	0.43
%ile	64.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.97	1613994_at	BQ794302	hypothetical protein LOC100260766	-	6e-21	At2g31090	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.98	1614591_at	CF216033	hypothetical protein LOC100254924	-	7e-19	At1g03900	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1611449_at	CD797700	hypothetical protein LOC100251803	-	6e-9	At5g47710	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.98	1613235_at	CF512455	hypothetical protein LOC100260767	-	1e-20	At1g17080	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.97	1621118_s_at	CD801405	hypothetical protein LOC100247365	-	9e+0	At2g27080	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1619491_s_at	CF213714	hypothetical protein LOC100253896	-	2e-125	At5g17310	UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1607243_at	CD801288	hypothetical protein LOC100253217	-	4e-72	At2g25610	H+-transporting two-sector ATPase, C subunit family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	1612872_at	CF414815	hypothetical protein LOC100243801	-	2e-8	At1g07140	SIRANBP	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.98	1620188_s_at	CF215897	hypothetical protein LOC100257968	-	3e-16	At4g20410	GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN)	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.98	1610475_at	CB979928	hypothetical protein LOC100242577	-	1e-7	At4g20380	zinc finger protein (LSD1)	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.98	1612799_at	CD801229	hypothetical protein LOC100264088	-	9e-31	At3g05010	transmembrane protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.8	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.4	95.5	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.3	95.2	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
2.4	91.3	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.4	91.3	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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