Co-expression analysis

Gene ID	1613934_s_at
Gene name	hypothetical protein LOC100260053
Homology with Arabidopsis	Similar to Atmg01370: - (HF=1e+1)
Module size	32 genes
NF	0.42
%ile	62.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	94.8	0.95	1613934_s_at	CA814354	hypothetical protein LOC100260053	-	1e+1	Atmg01370	-	O.I.	H.G.	S.X.	Please select
0.58	79.8	0.97	1615340_at	BQ799199	similar to A_IG002N01.31 gene product	-	1e-30	At4g01050	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.98	1622642_at	CA814554	hypothetical protein LOC100244293	-	2e+0	At5g51110	4-alpha-hydroxytetrahydrobiopterin dehydratase	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.98	1607497_at	CF511267	hypothetical protein LOC100259748	-	1e-94	At5g06290	2-Cys Prx B (2-Cysteine peroxiredoxin B)	O.I.	H.G.	S.X.	Please select
0.54	75.7	0.97	1609094_a_at	CD801602	hypothetical protein LOC100246766	-	1e+0	At1g10455	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.98	1611733_s_at	BQ797982	hypothetical protein LOC100240928	-	2e-12	At1g03130	PSAD-2 (photosystem I subunit D-2)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.98	1613405_at	CF413625	hypothetical protein LOC100250386	-	5e-28	At3g62030	peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4)	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.96	1613843_at	CF404498	hypothetical protein LOC100259632	-	2e-4	At4g15510	photosystem II reaction center PsbP family protein	O.I.	H.G.	S.X.	Please select
0.51	73.2	0.97	1613550_at	CF519120	hypothetical protein LOC100255002	-	1e-1	At5g19240	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	69.3	0.97	1616222_at	CF414707	-	-	1e-18	At3g47650	bundle-sheath defective protein 2 family / bsd2 family	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.98	1616415_at	CF405075	hypothetical protein LOC100254604	-	3e-4	At5g49030	OVA2 (ovule abortion 2)	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.98	1612544_at	BQ793854	hypothetical protein LOC100260093	-	5e-13	At5g40950	RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27)	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.98	1616667_a_at	CB343534	similar to ribosomal protein L29 family protein /// hypothetical protein LOC100259766	-	7e-5	At5g65220	ribosomal protein L29 family protein	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.97	1619503_at	CB345056	hypothetical protein LOC100254346	-	2e-124	At5g23120	HCF136	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.98	1620744_at	CF403966	hypothetical protein LOC100248911	-	2e-6	At1g20340	DRT112	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.97	1612906_at	CB973863	hypothetical protein LOC100257384	-	3e-21	At5g13410	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.98	1622193_at	CF208331	hypothetical protein LOC100265325	-	2e-35	At5g30510	RPS1 (RIBOSOMAL PROTEIN S1)	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.96	1615961_at	CB344451	hypothetical protein LOC100241886	-	7e-5	At4g35250	vestitone reductase-related	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.95	1606713_at	BQ797803	hypothetical protein LOC100242823	-	2e-43	At5g63310	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.98	1619816_at	CA817914	hypothetical protein LOC100250681	-	2e-11	At1g75350	emb2184 (embryo defective 2184)	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.97	1610544_s_at	CB002886	hypothetical protein LOC100246662	-	1e-25	At4g01150	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.96	1617988_at	CA817224	hypothetical protein LOC100243747	-	2e-4	At2g35410	33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.97	1620011_at	CA809496	O-acetylserine(thiol)-lyase	-	9e-27	At3g59760	OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C)	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.96	1606617_at	CF608010	hypothetical protein LOC100244206	-	1e+0	At1g16730	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1617522_a_at	BQ793176	hypothetical protein LOC100242924	-	5e-6	At1g50320	ATHX	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1606900_at	CA816931	hypothetical protein LOC100254016	-	4e-16	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.97	1613595_at	BQ799166	hypothetical protein LOC100248004	-	5e-139	At2g45290	transketolase, putative	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.97	1619899_at	CF403654	-	-	1e+0	At1g65740	F-box family protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.95	1610546_at	CB976033	similar to Os12g0541500	-	1e-35	At4g29060	emb2726 (embryo defective 2726)	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.98	1618670_at	BQ798857	hypothetical protein LOC100264831	-	2e-14	At5g27560	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.97	1609931_at	CF512273	hypothetical protein LOC100264352	-	3e-4	At2g26500	cytochrome b6f complex subunit (petM), putative	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.95	1611683_s_at	BQ799199	similar to A_IG002N01.31 gene product	-	1e-30	At4g01050	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.2	89.9	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.8	86.0	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
1.8	86.0	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
1.6	83.3	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.6	83.3	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage