Co-expression analysis

Gene ID 1613916_at
Gene name hypothetical protein LOC100250922
Homology with ArabidopsisSimilar to At5g64410: OPT4 (OLIGOPEPTIDE TRANSPORTER 4) (HF=1e-24)
Module size 9 genes
NF 0.33
%ile 46.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5375.20.931613916_atCF404702hypothetical protein LOC100250922-1e-24At5g64410OPT4 (OLIGOPEPTIDE TRANSPORTER 4)O.I.H.G.S.X.
0.5375.20.941607656_atCF514698hypothetical protein LOC100252782-2e+0At4g16210ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)O.I.H.G.S.X.
0.4868.80.941606798_atCF209842glutamine synthetase-5e-42At3g17820ATGSKB6O.I.H.G.S.X.
0.3243.10.951621674_atCF515644hypothetical protein LOC100246584-2e-27At3g56950SIP2O.I.H.G.S.X.
0.3141.30.961610660_atCB008720hypothetical LOC100263492-1e+0At2g20700unknown proteinO.I.H.G.S.X.
0.2428.70.941619688_x_atCF204108.1--9e-1At4g35280zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.2327.50.931614326_s_atCF518670hypothetical protein LOC100255146-1e+0At4g04630unknown proteinO.I.H.G.S.X.
0.2327.50.941617782_atBQ799406--3e-1At1g66560WRKY64O.I.H.G.S.X.
0.1718.20.941619854_atBQ796294--7e-16At2g20860LIP1 (LIPOIC ACID SYNTHASE 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.096.7GSM147690Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation19Link to GEO
2.893.4GSM147675Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation4Link to GEO
2.893.4GSM147673Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation2Link to GEO
2.591.9GSM436354Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM147676Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation5Link to GEO
2.088.2GSM436396V. riparia (VR, PI588259) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM436379Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM436346Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM436371Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM436358Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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