Co-expression analysis

Gene ID	1613916_at
Gene name	hypothetical protein LOC100250922
Homology with Arabidopsis	Similar to At5g64410: OPT4 (OLIGOPEPTIDE TRANSPORTER 4) (HF=1e-24)
Module size	9 genes
NF	0.33
%ile	46.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	75.2	0.93	1613916_at	CF404702	hypothetical protein LOC100250922	-	1e-24	At5g64410	OPT4 (OLIGOPEPTIDE TRANSPORTER 4)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.94	1607656_at	CF514698	hypothetical protein LOC100252782	-	2e+0	At4g16210	ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.94	1606798_at	CF209842	glutamine synthetase	-	5e-42	At3g17820	ATGSKB6	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.95	1621674_at	CF515644	hypothetical protein LOC100246584	-	2e-27	At3g56950	SIP2	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.96	1610660_at	CB008720	hypothetical LOC100263492	-	1e+0	At2g20700	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.94	1619688_x_at	CF204108.1	-	-	9e-1	At4g35280	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.93	1614326_s_at	CF518670	hypothetical protein LOC100255146	-	1e+0	At4g04630	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.94	1617782_at	BQ799406	-	-	3e-1	At1g66560	WRKY64	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.94	1619854_at	BQ796294	-	-	7e-16	At2g20860	LIP1 (LIPOIC ACID SYNTHASE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	96.7	GSM147690	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	19
2.8	93.4	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
2.8	93.4	GSM147673	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	2
2.5	91.9	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM147676	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	5
2.0	88.2	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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