Co-expression analysis

Gene ID	1613839_at
Gene name
Homology with Arabidopsis	Similar to At1g68990: DNA-directed RNA polymerase, mitochondrial (RPOMT) (HF=2e-14)
Module size	23 genes
NF	0.22
%ile	31.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	92.7	0.89	1613839_at	CB001705	-	-	2e-14	At1g68990	DNA-directed RNA polymerase, mitochondrial (RPOMT)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.93	1608135_at	CF206119.1	-	-	1e+0	At2g47650	UXS4 (UDP-XYLOSE SYNTHASE 4)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.93	1614538_at	AY427198.1	-	-	2e-1	At3g46760	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.94	1620333_at	CF608264	-	-	1e-10	At3g08020	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.94	1607040_at	CF568797	-	-	5e-24	At1g54610	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.92	1614154_at	CF568802	-	-	7e-8	At1g72440	EDA25 (embryo sac development arrest 25)	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.93	1615204_at	CF371804	-	-	1e+0	At3g21580	cobalt ion transmembrane transporter	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.94	1617917_at	CF405637	-	-	4e+0	At1g53100	acetylglucosaminyltransferase	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.94	1618712_at	CB003306	-	-	3e-1	At4g21330	DYT1 (DYSFUNCTIONAL TAPETUM 1)	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.92	1622036_at	CB983151	-	-	6e+0	At2g45190	AFO (ABNORMAL FLORAL ORGANS)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.94	1613232_at	CF516759	hypothetical LOC100244581	-	1e+0	At1g15710	prephenate dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.94	1609630_at	CB002524	-	-	4e-14	At3g14205	phosphoinositide phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.93	1610333_at	CD711415	-	-	5e-2	At1g43800	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.93	1616290_at	CK136938.1	-	-	7e-5	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.95	1618732_at	BQ792959	-	-	2e-8	At3g49140	-	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.95	1621260_at	BQ797265	-	-	3e-1	At4g30630	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.96	1616416_at	CB349840	hypothetical protein LOC100251243	-	7e+0	At3g43740	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.96	1612983_at	CB344129	hypothetical protein LOC100249094	-	1e-1	At3g15790	MBD11	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.96	1606871_at	CB970216	hypothetical protein LOC100265666	-	1e-3	At4g11090	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	8.5	0.94	1609587_at	CF202068.1	-	-	5e-9	At1g32220	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.95	1607490_at	CF214086	hypothetical protein LOC100258031	-	1e-5	At1g08340	rac GTPase activating protein, putative	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.95	1610277_at	CF208016	hypothetical protein LOC100257821	-	2e-1	At1g17710	phosphatase	O.I.	H.G.	S.X.	Please select
0.02	3.2	0.94	1617258_at	CF516015	hypothetical protein LOC100245053	-	4e+0	At5g23060	CaS (Calcium sensing receptor)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	94.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.8	93.4	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.4	91.3	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.3	90.7	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.2	89.9	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
2.2	89.9	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.1	89.1	GSM147715	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	44
1.9	87.2	GSM436384	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
1.8	86.0	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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