Co-expression analysis

Gene ID	1613834_at
Gene name	hypothetical protein LOC100258445
Homology with Arabidopsis	Similar to At3g08030: unknown protein (HF=3e-9)
Module size	6 genes
NF	0.49
%ile	73.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.96	1613834_at	BQ797196	hypothetical protein LOC100258445	-	3e-9	At3g08030	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.94	1619339_s_at	CF215343	ripening-related protein-like	-	3e+0	At2g23780	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.94	1621448_at	BQ796150	hypothetical protein LOC100251801	-	7e-3	At5g07680	ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80)	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.95	1622477_at	CF414040	hypothetical protein LOC100261452	-	4e-4	At3g22550	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.95	1619667_at	BQ797924	similar to DRT100	-	8e-1	At5g06860	PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.95	1606826_at	CF210409	hypothetical protein LOC100250592	-	1e-7	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	94.6	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.6	92.5	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
2.6	92.5	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.4	91.3	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
2.4	91.3	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.4	91.3	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
2.3	90.7	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.2	89.9	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM147705	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	34

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage