Co-expression analysis

Gene ID	1613719_at
Gene name	hypothetical protein LOC100253441
Homology with Arabidopsis	Similar to At3g50170: unknown protein (HF=5e-1)
Module size	15 genes
NF	0.78
%ile	97.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.6	0.85	1613719_at	CF214562	hypothetical protein LOC100253441	-	5e-1	At3g50170	unknown protein	O.I.	H.G.	S.X.	Please select
0.90	95.6	0.91	1610251_at	CF213132	-	-	4e+0	At5g65080	MAF5 (MADS AFFECTING FLOWERING 5)	O.I.	H.G.	S.X.	Please select
0.89	95.5	0.93	1607667_at	CF212686	hypothetical protein LOC100240808	-	3e-32	At5g01190	LAC10 (laccase 10)	O.I.	H.G.	S.X.	Please select
0.85	94.9	0.91	1607960_at	CF415350	hypothetical protein LOC100243780	-	3e-2	At4g20470	unknown protein	O.I.	H.G.	S.X.	Please select
0.84	94.8	0.94	1622791_at	CB973455	hypothetical protein LOC100241197	-	1e-40	At5g44030	CESA4 (CELLULOSE SYNTHASE A4)	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.91	1609391_s_at	CF404650	hypothetical protein LOC100243780	-	3e+0	At5g09380	DNA-directed RNA polymerase III RPC4 family protein	O.I.	H.G.	S.X.	Please select
0.81	93.7	0.92	1619612_at	CF211611	hypothetical protein LOC100252178	-	4e+0	At5g25080	-	O.I.	H.G.	S.X.	Please select
0.81	93.7	0.93	1610830_at	CF213757	hypothetical protein LOC100263385	-	5e-10	At2g45820	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.76	91.5	0.91	1619519_at	CB971445	hypothetical protein LOC100250171	-	1e+0	At4g37200	HCF164	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.91	1619280_at	CF211860	hypothetical protein LOC100261696	-	5e-15	At4g18780	IRX1 (IRREGULAR XYLEM 1)	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.92	1619092_s_at	CF212115	hypothetical protein LOC100260885	-	4e-15	At1g09610	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	88.3	0.91	1613530_at	CF213038	hypothetical protein LOC100244931	-	3e-38	At2g28315	-	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.91	1609045_at	CF214620	isoflavone reductase-like protein 4	-	2e-7	At1g75280	isoflavone reductase, putative	O.I.	H.G.	S.X.	Please select
0.65	85.0	0.89	1620054_at	CF214049	hypothetical protein LOC100259508	-	1e-3	At1g47970	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.89	1622487_at	CF215822	hypothetical protein LOC100260885	-	5e-21	At1g09610	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.3	90.7	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.3	90.7	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.2	89.9	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.1	89.1	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.1	89.1	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.8	86.0	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
1.8	86.0	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.8	86.0	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
1.7	84.7	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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