Co-expression analysis

Gene ID	1613712_at
Gene name	hypothetical protein LOC100248230
Homology with Arabidopsis	Similar to At2g37478: CPuORF52 (Conserved peptide upstream open reading frame 52) (HF=3e-9)
Module size	6 genes
NF	0.32
%ile	46.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.5	0.97	1613712_at	CF403703	hypothetical protein LOC100248230	-	3e-9	At2g37478	CPuORF52 (Conserved peptide upstream open reading frame 52)	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.97	1619706_at	CD801487	hypothetical protein LOC100255366	-	8e-18	At5g52370	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.97	1608288_at	CD712676	hypothetical protein LOC100257215	-	3e-14	At2g16090	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.98	1618879_s_at	CF373702	hypothetical protein LOC100254193	-	7e-44	At1g25682	cell cycle control protein-related	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.97	1612879_at	BQ792341	hypothetical protein LOC100260024	-	2e+0	At5g02060	integral membrane protein, putative	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.98	1612191_at	CF208807	hypothetical protein LOC100247661	-	2e-52	At3g53090	UPL7	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	97.5	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.4	97.3	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.1	94.6	GSM436384	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436365	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM436426	V. riparia (VR, PI588259) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147678	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	7
2.5	91.9	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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