Co-expression analysis

Gene ID 1613698_at
Gene name hypothetical protein LOC100242632
Homology with ArabidopsisSimilar to At5g51190: AP2 domain-containing transcription factor, putative (HF=7e-6)
Module size 20 genes
NF 0.57
%ile 84.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6888.00.831613698_atCF403989hypothetical protein LOC100242632-7e-6At5g51190AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.7892.60.911611910_s_atAY395745.1similar to putative ethylene response factor ERF3b-9e-14At3g15210ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)O.I.H.G.S.X.
0.7491.00.911608511_atCB342877hypothetical protein LOC100259747-1e+0At5g51190AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.7088.60.931617671_s_atAY395744.1hypothetical protein LOC100248784-2e-5At3g15210ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)O.I.H.G.S.X.
0.6888.00.931622598_atCF372747hypothetical protein LOC100253485-3e-27At5g22250CCR4-NOT transcription complex protein, putativeO.I.H.G.S.X.
0.6283.30.921614256_atCB002433hypothetical protein LOC100253803-2e-1At4g18620-O.I.H.G.S.X.
0.6081.90.881619573_atCD721204hypothetical protein LOC100250659-2e-3At1g27730STZ (salt tolerance zinc finger)O.I.H.G.S.X.
0.5980.60.941609190_atBQ798327hypothetical protein LOC100253381-6e+0At3g23180-O.I.H.G.S.X.
0.5879.80.941616198_atCF405950hypothetical protein LOC100242144-1e-7At1g28370ERF11 (ERF DOMAIN PROTEIN 11)O.I.H.G.S.X.
0.5879.80.911622773_atCF605812hypothetical protein LOC100253381-2e-2At4g15975protein binding / zinc ion bindingO.I.H.G.S.X.
0.5779.80.911610721_s_atCB342242--1e+0At2g27130protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.5779.80.921609107_atCF608697hypothetical protein LOC100258264-1e-13At1g27730STZ (salt tolerance zinc finger)O.I.H.G.S.X.
0.5779.80.931609990_atCB009298similar to putative ethylene response factor ERF3b-1e-13At3g15210ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)O.I.H.G.S.X.
0.5173.20.891617999_atCA815163hypothetical protein LOC100248666-4e+0At3g15280unknown proteinO.I.H.G.S.X.
0.5173.20.911619478_atCD004753hypothetical protein LOC100247440-3e-9At5g12010unknown proteinO.I.H.G.S.X.
0.4969.30.911612490_atCB035871--4e+0At2g39920acid phosphatase class B family proteinO.I.H.G.S.X.
0.4564.60.941608966_atCB982651hypothetical protein LOC100256404-2e-4At5g59550zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4464.10.901613098_atCD716212hypothetical protein LOC100264214-2e-6At4g08950EXO (EXORDIUM)O.I.H.G.S.X.
0.3853.60.921606975_atCD799008hypothetical protein LOC100248784-4e-5At3g15210ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)O.I.H.G.S.X.
0.3548.50.901609546_s_atCF608878hypothetical protein LOC100265659-3e-1At5g63030glutaredoxin, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.094.2GSM147741Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation70Link to GEO
2.591.9GSM147721Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation50Link to GEO
2.390.7GSM147726Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation55Link to GEO
2.189.1GSM147734Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation63Link to GEO
2.088.2GSM436394V. riparia (VR, PI588259) LD, 15h 7 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM147710Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation39Link to GEO
2.088.2GSM147742Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation71Link to GEO
1.987.2GSM147720Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation49Link to GEO
1.886.0GSM322366genotype: Chardonnay - disease type: Healthy - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
1.886.0GSM147739Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation68Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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