Co-expression analysis

Gene ID	1613691_s_at
Gene name	hypothetical protein LOC100254533
Homology with Arabidopsis	Similar to At2g05100: LHCB2.1 (HF=5e-35)
Module size	7 genes
NF	0.55
%ile	81.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	93.6	0.98	1613691_s_at	CF511746	hypothetical protein LOC100254533	-	5e-35	At2g05100	LHCB2.1	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1611247_s_at	CF206748.1	similar to cytochrome f	-	2e+0	At1g65490	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.98	1616847_s_at	CA816751	hypothetical protein LOC100267942	-	2e-12	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1614231_s_at	CB970079	hypothetical protein LOC100245250	-	3e-5	At3g15360	TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1609160_at	CF215744	hypothetical protein LOC100257877	-	2e-28	At5g47110	lil3 protein, putative	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1622302_s_at	CF207602	hypothetical protein LOC100245459	-	2e-19	At5g66570	PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1615706_at	CA816068	hypothetical protein LOC100257450	-	1e-4	At1g44920	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.9	99.1	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
6.7	99.0	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.9	97.9	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.4	97.3	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.6	92.5	GSM436410	V. riparia (VR, PI588259) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
2.2	89.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.2	89.9	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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