Co-expression analysis

Gene ID	1613611_at
Gene name	hypothetical protein LOC100252795
Homology with Arabidopsis	Similar to At2g37650: scarecrow-like transcription factor 9 (SCL9) (HF=1e-11)
Module size	20 genes
NF	0.25
%ile	35.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.6	0.95	1613611_at	CF209351	hypothetical protein LOC100252795	-	1e-11	At2g37650	scarecrow-like transcription factor 9 (SCL9)	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.97	1618470_at	CD012303	hypothetical protein LOC100253407	-	2e+0	At3g30460	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.96	1609687_at	CB008253	hypothetical protein LOC100252580	-	1e-3	At4g32285	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.97	1617313_a_at	CF513789	hypothetical protein LOC100256994	-	2e-2	At1g64040	TOPP3	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.97	1622402_at	CD799344	hypothetical protein LOC100241730	-	4e+0	At3g15260	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.96	1612006_at	BQ794543	hypothetical protein LOC100265199	-	3e-43	At3g02050	KUP3 (K+ UPTAKE TRANSPORTER 3)	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.98	1617088_at	BQ797725	hypothetical protein LOC100245381	-	1e-31	At4g35230	BSK1 (BR-SIGNALING KINASE 1)	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.97	1611826_at	CB977629	hypothetical protein LOC100262670	-	2e-9	At4g25500	ATRSP35	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.97	1621662_at	CB344466	hypothetical protein LOC100243580	-	2e-3	At3g20420	RTL2 (RNASE THREE-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.97	1618628_at	CD800397	hypothetical protein LOC100244382 /// similar to Os03g0235100	-	3e-17	At1g61150	-	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.98	1612687_at	CB975562	hypothetical protein LOC100260844	-	7e+0	At5g46980	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.98	1619039_at	CF405804	hypothetical protein LOC100261285	-	2e-3	At4g14440	HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.97	1613668_at	CD799782	hypothetical protein LOC100263774	-	3e-23	At5g05710	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.97	1617401_at	CF210307	hypothetical protein LOC100263342	-	1e-1	At5g66730	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.97	1616753_at	CB343298	hypothetical protein LOC100262441	-	3e-27	At2g46920	POL (poltergeist)	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.97	1618286_at	BQ796746	hypothetical protein LOC100248027	-	5e-27	At3g14230	RAP2.2	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.97	1620602_at	BQ796987	hypothetical protein LOC100250131	-	2e-47	At5g01960	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.97	1608789_at	CF207355	hypothetical protein LOC100258912	-	2e-16	At2g47070	SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.96	1614391_at	CD714608	hypothetical protein LOC100247283	-	4e-8	At4g28400	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.97	1606984_at	CB919078	hypothetical protein LOC100251815	-	8e-34	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	95.2	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
1.9	87.2	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.9	87.2	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
1.8	86.0	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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