Co-expression analysis

Gene ID	1613603_at
Gene name	hypothetical protein LOC100248706
Homology with Arabidopsis	Similar to At1g47670: amino acid transporter family protein (HF=1e-7)
Module size	6 genes
NF	0.70
%ile	94.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.93	1613603_at	CF211665	hypothetical protein LOC100248706	-	1e-7	At1g47670	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.93	1610600_at	CA813949	hypothetical protein LOC100242774 /// hypothetical protein LOC100248732 /// hypothetical protein LOC100253829	-	3e-1	At3g08580	AAC1 (ADP/ATP CARRIER 1)	O.I.	H.G.	S.X.	Please select
0.77	92.3	0.89	1613837_at	CF605759	hypothetical protein LOC100248706	-	4e-4	At1g47670	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.91	1617596_at	CF201215.1	hypothetical protein LOC100264999	-	1e+0	At4g32590	ferredoxin-related	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.92	1617483_at	CD799044	hypothetical protein LOC100267019	-	1e+0	At2g04170	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.91	1609744_at	CF203760.1	hypothetical protein LOC100240811 /// hypothetical protein LOC100263073	-	2e+0	At3g42630	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.8	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.5	95.7	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.3	95.2	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.0	94.2	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.2	89.9	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
2.0	88.2	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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