CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1613573_at

Gene name hypothetical protein LOC100260045
Homology with Arabidopsis Similar to At1g53860: remorin family protein (HF=6e-33)

Module size 13 genes

NF 0.75

%ile 96.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 94.6 0.96 1613573_at CF609267 hypothetical protein LOC100260045 - 6e-33 At1g53860 remorin family protein O.I. H.G. S.X.
0.92 99.0 0.97 1611748_s_at CB969590 similar to PDF - 1e-1 At2g42840 PDF1 (PROTODERMAL FACTOR 1) O.I. H.G. S.X.
0.86 95.1 0.96 1609418_s_at CF568955 hypothetical protein LOC100246054 /// hypothetical protein LOC100255543 /// hypothetical protein LOC100258516 /// hypothetical protein LOC100261331 /// hypothetical protein LOC100266538 - 4e+0 At5g35375 unknown protein O.I. H.G. S.X.
0.86 95.1 0.96 1613074_at CB969590 similar to PDF - 1e-1 At2g42840 PDF1 (PROTODERMAL FACTOR 1) O.I. H.G. S.X.
0.85 94.9 0.97 1607851_at CF415102 hypothetical protein LOC100266538 - 9e-2 At1g04660 glycine-rich protein O.I. H.G. S.X.
0.79 92.7 0.96 1617280_s_at CF373668 hypothetical protein LOC100258720 - 5e-3 At2g27385 unknown protein O.I. H.G. S.X.
0.67 87.9 0.96 1609703_at CF213302 similar to homeodomain protein ARBORKNOX1 - 2e-43 At1g62360 STM (SHOOT MERISTEMLESS) O.I. H.G. S.X.
0.67 87.9 0.96 1615124_at CF514122 hypothetical protein LOC100258563 - 8e-5 At1g71691 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.
0.64 84.7 0.96 1621559_at CF415172 hypothetical protein LOC100262734 - 3e-51 At3g28860 ABCB19 O.I. H.G. S.X.
0.61 83.2 0.96 1619772_at CF205273.1 hypothetical protein LOC100260458 - 2e+0 At3g05070 - O.I. H.G. S.X.
0.61 83.2 0.97 1615898_at CF404727 hypothetical protein LOC100247526 - 6e-2 At2g22100 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.57 79.8 0.96 1614876_at CF213268 hypothetical protein LOC100244642 - 1e+0 At1g73510 unknown protein O.I. H.G. S.X.
0.57 79.8 0.96 1622481_x_at CF568921 - - 3e-2 At5g10430 AGP4 (ARABINOGALACTAN PROTEIN 4) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.1 94.6 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.7 93.0 GSM147742 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 71
2.6 92.5 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.2 89.9 GSM436423 V. riparia (VR, PI588259) SD, 13h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM147724 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 53
2.2 89.9 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.1 89.1 GSM287877 Green hard berry B12 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM287885 Green soft berry A22 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM287904 Red soft berry C31 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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