Co-expression analysis

Gene ID 1613491_at
Gene name
Homology with ArabidopsisSimilar to At2g05900: SDG11 (SET DOMAIN-CONTAINING PROTEIN 11) (HF=5e+0)
Module size 6 genes
NF 0.02
%ile 3.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.731613491_atCD007436--5e+0At2g05900SDG11 (SET DOMAIN-CONTAINING PROTEIN 11)O.I.H.G.S.X.
0.2937.70.931620815_atCF568885--1e-15At1g45230defective chloroplasts and leaves protein-related / DCL protein-relatedO.I.H.G.S.X.
0.1414.40.911610593_atCD715465--1e-35At4g16390-O.I.H.G.S.X.
0.056.00.931619188_atCF204375.1--2e+0At1g48940plastocyanin-like domain-containing proteinO.I.H.G.S.X.
0.023.20.901613112_atCK138195.1--2e+0At3g56140unknown proteinO.I.H.G.S.X.
-0.50.921609313_atCF403611similar to 2-oxo acid dehydrogenase, lipoyl-binding site-6e-2At4g22320unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.199.5GSM322362genotype: Chardonnay - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
8.699.5GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
6.298.8GSM436409V. riparia (VR, PI588259) SD, 13h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
6.098.7GSM322365genotype: Chardonnay - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
6.098.7GSM322363genotype: Chardonnay - disease type: Bois Noir infected - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
5.998.6GSM322366genotype: Chardonnay - disease type: Healthy - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
5.498.3GSM322369genotype: Incrocio Manzoni - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
4.897.8GSM322361genotype: Chardonnay - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.194.6GSM436411V. riparia (VR, PI588259) SD, 13h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.893.4GSM322364genotype: Chardonnay - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.7491.1.S1_at, orthologous to the query gene, 1613491_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.2TaAffx.7491.1.S1_atAt2g05900--4e+0At2g05755integral membrane family proteinO.I.H.G.S.X.
0.3142.7Ta.30065.1.S1_atAt2g05900--8e-2At4g32030unknown proteinO.I.H.G.S.X.
0.012.4Ta.1768.1.S1_x_atAt2g05900--2e-1At4g02340epoxide hydrolase, putativeO.I.H.G.S.X.
0.012.4Ta.11560.3.S1_x_atAt2g05900--2e-5At4g31410unknown proteinO.I.H.G.S.X.
0.012.4TaAffx.121954.2.S1_atAt2g05900--1e-3At2g36360kelch repeat-containing proteinO.I.H.G.S.X.
0.000.7TaAffx.12873.1.S1_atAt2g05900--1e-5At1g28520VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage