Co-expression analysis

Gene ID	1613491_at
Gene name
Homology with Arabidopsis	Similar to At2g05900: SDG11 (SET DOMAIN-CONTAINING PROTEIN 11) (HF=5e+0)
Module size	6 genes
NF	0.02
%ile	3.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.73	1613491_at	CD007436	-	-	5e+0	At2g05900	SDG11 (SET DOMAIN-CONTAINING PROTEIN 11)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.93	1620815_at	CF568885	-	-	1e-15	At1g45230	defective chloroplasts and leaves protein-related / DCL protein-related	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.91	1610593_at	CD715465	-	-	1e-35	At4g16390	-	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.93	1619188_at	CF204375.1	-	-	2e+0	At1g48940	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.02	3.2	0.90	1613112_at	CK138195.1	-	-	2e+0	At3g56140	unknown protein	O.I.	H.G.	S.X.	Please select
-	0.5	0.92	1609313_at	CF403611	similar to 2-oxo acid dehydrogenase, lipoyl-binding site	-	6e-2	At4g22320	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.1	99.5	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
8.6	99.5	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
6.2	98.8	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
6.0	98.7	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
6.0	98.7	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
5.9	98.6	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
5.4	98.3	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.8	97.8	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.1	94.6	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.146463.2.A1_s_at, orthologous to the query gene, 1613491_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.52	79.4	PtpAffx.146463.2.A1_s_at	At2g05900	hypothetical protein	-	3e+0	At5g45680	FK506-binding protein 1 (FKBP13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.82	96.3	PtpAffx.201923.1.S1_at	At2g05900	hypothetical protein	-	2e+0	At5g06690	WCRKC1 (WCRKC THIOREDOXIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	Ptp.6904.1.S1_s_at	At2g05900	hypothetical protein	-	2e-9	At1g73620	thaumatin-like protein, putative / pathogenesis-related protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.76	94.3	PtpAffx.202741.1.S1_at	At2g05900	hypothetical protein	-	1e-5	At1g04020	BARD1 (BREAST CANCER ASSOCIATED RING 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.70	91.7	PtpAffx.24672.2.A1_a_at	At2g05900	hypothetical protein	-	6e-18	At3g46940	deoxyuridine 5'-triphosphate nucleotidohydrolase family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.65	88.6	Ptp.6706.1.S1_x_at	At2g05900	-	-	6e-68	At5g10400	histone H3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	Ptp.6669.1.S1_at	At2g05900	histone H4	-	5e-55	At1g07660	histone H4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.62	87.2	PtpAffx.11933.1.S1_at	At2g05900	histone 2	-	2e-12	At1g08880	H2AXA	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.50479.1.A1_at	At2g05900	hypothetical protein	-	2e+0	At4g12790	ATP-binding family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	PtpAffx.94838.1.A1_at	At2g05900	hypothetical protein	-	1e-3	At1g73620	thaumatin-like protein, putative / pathogenesis-related protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.127520.1.A1_at	At2g05900	hypothetical protein	-	1e-3	At4g32980	ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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