CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1613491_at

Gene name
Homology with Arabidopsis Similar to At2g05900: SDG11 (SET DOMAIN-CONTAINING PROTEIN 11) (HF=5e+0)

Module size 6 genes

NF 0.02

%ile 3.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.73 1613491_at CD007436 - - 5e+0 At2g05900 SDG11 (SET DOMAIN-CONTAINING PROTEIN 11) O.I. H.G. S.X.
0.29 37.7 0.93 1620815_at CF568885 - - 1e-15 At1g45230 defective chloroplasts and leaves protein-related / DCL protein-related O.I. H.G. S.X.
0.14 14.4 0.91 1610593_at CD715465 - - 1e-35 At4g16390 - O.I. H.G. S.X.
0.05 6.0 0.93 1619188_at CF204375.1 - - 2e+0 At1g48940 plastocyanin-like domain-containing protein O.I. H.G. S.X.
0.02 3.2 0.90 1613112_at CK138195.1 - - 2e+0 At3g56140 unknown protein O.I. H.G. S.X.
- 0.5 0.92 1609313_at CF403611 similar to 2-oxo acid dehydrogenase, lipoyl-binding site - 6e-2 At4g22320 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.1 99.5 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
8.6 99.5 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
6.2 98.8 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
6.0 98.7 GSM322365 genotype: Chardonnay - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
6.0 98.7 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
5.9 98.6 GSM322366 genotype: Chardonnay - disease type: Healthy - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
5.4 98.3 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.8 97.8 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.1 94.6 GSM436411 V. riparia (VR, PI588259) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM322364 genotype: Chardonnay - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

A co-expression module including the rice gene, Os10g0551800, orthologous to the query gene, 1613491_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 Os10g0551800 At2g05900 - Root-specific protein (RCc2 protein) 2e+0 At5g17870 PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6) O.I. H.G. S.X.
0.40 51.1 Os01g0594300 At2g05900 - Extensin-like protein 4e+0 At4g13340 leucine-rich repeat family protein / extensin family protein O.I. H.G. S.X.
0.40 51.1 Os03g0633800 At2g05900 - IAA6 (Fragment) 2e+0 At5g25890 IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28) O.I. H.G. S.X.
0.31 34.5 Os10g0555600 At2g05900 - Beta-expansin precursor 4e-2 At3g06080 unknown protein O.I. H.G. S.X.
0.21 17.9 Os08g0189200 At2g05900 - Oxalate oxidase (Fragment) 3e-2 At5g39110 germin-like protein, putative O.I. H.G. S.X.
0.05 2.5 Os05g0134700 At2g05900 - Haem peroxidase, plant/fungal/bacterial familyprotein 4e-2 At3g55880 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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