Co-expression analysis

Gene ID 1613491_at
Gene name
Homology with ArabidopsisSimilar to At2g05900: SDG11 (SET DOMAIN-CONTAINING PROTEIN 11) (HF=5e+0)
Module size 6 genes
NF 0.02
%ile 3.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.731613491_atCD007436--5e+0At2g05900SDG11 (SET DOMAIN-CONTAINING PROTEIN 11)O.I.H.G.S.X.
0.2937.70.931620815_atCF568885--1e-15At1g45230defective chloroplasts and leaves protein-related / DCL protein-relatedO.I.H.G.S.X.
0.1414.40.911610593_atCD715465--1e-35At4g16390-O.I.H.G.S.X.
0.056.00.931619188_atCF204375.1--2e+0At1g48940plastocyanin-like domain-containing proteinO.I.H.G.S.X.
0.023.20.901613112_atCK138195.1--2e+0At3g56140unknown proteinO.I.H.G.S.X.
-0.50.921609313_atCF403611similar to 2-oxo acid dehydrogenase, lipoyl-binding site-6e-2At4g22320unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.199.5GSM322362genotype: Chardonnay - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
8.699.5GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
6.298.8GSM436409V. riparia (VR, PI588259) SD, 13h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
6.098.7GSM322365genotype: Chardonnay - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
6.098.7GSM322363genotype: Chardonnay - disease type: Bois Noir infected - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
5.998.6GSM322366genotype: Chardonnay - disease type: Healthy - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
5.498.3GSM322369genotype: Incrocio Manzoni - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
4.897.8GSM322361genotype: Chardonnay - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.194.6GSM436411V. riparia (VR, PI588259) SD, 13h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.893.4GSM322364genotype: Chardonnay - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os10g0551800, orthologous to the query gene, 1613491_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6787.2Os10g0551800At2g05900-Root-specific protein (RCc2 protein)2e+0At5g17870PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6)O.I.H.G.S.X.
0.4051.1Os01g0594300At2g05900-Extensin-like protein4e+0At4g13340leucine-rich repeat family protein / extensin family proteinO.I.H.G.S.X.
0.4051.1Os03g0633800At2g05900-IAA6 (Fragment)2e+0At5g25890IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28)O.I.H.G.S.X.
0.3134.5Os10g0555600At2g05900-Beta-expansin precursor4e-2At3g06080unknown proteinO.I.H.G.S.X.
0.2117.9Os08g0189200At2g05900-Oxalate oxidase (Fragment)3e-2At5g39110germin-like protein, putativeO.I.H.G.S.X.
0.052.5Os05g0134700At2g05900-Haem peroxidase, plant/fungal/bacterial familyprotein4e-2At3g55880unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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