CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1613489_at

Gene name
Homology with Arabidopsis Similar to At3g25572: CPuORF11 (Conserved peptide upstream open reading frame 11) (HF=5e+0)

Module size 6 genes

NF 0.49

%ile 74.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 90.8 0.98 1613489_at CF403663 - - 5e+0 At3g25572 CPuORF11 (Conserved peptide upstream open reading frame 11) O.I. H.G. S.X.
0.53 75.2 0.98 1615702_at BQ797006 hypothetical protein LOC100268087 - 4e-5 At1g17980 nucleotidyltransferase family protein O.I. H.G. S.X.
0.50 72.7 0.99 1620419_at BQ794848 hypothetical protein LOC100241492 - 5e-1 At2g46330 AGP16 (ARABINOGALACTAN PROTEIN 16) O.I. H.G. S.X.
0.47 67.7 0.98 1615929_at CB970992 hypothetical protein LOC100246610 - 7e-16 At5g49580 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.35 48.5 0.98 1617244_s_at CB341989 hypothetical protein LOC100262315 - 1e-23 At4g22150 PUX3 O.I. H.G. S.X.
0.31 41.3 0.98 1619248_at CA813733 hypothetical protein LOC100264750 - 3e-1 At5g18100 CSD3 (copper/zinc superoxide dismutase 3) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.73	90.8	0.98	1613489_at	CF403663	-	-	5e+0	At3g25572	CPuORF11 (Conserved peptide upstream open reading frame 11)	O.I.	H.G.	S.X.
0.53	75.2	0.98	1615702_at	BQ797006	hypothetical protein LOC100268087	-	4e-5	At1g17980	nucleotidyltransferase family protein	O.I.	H.G.	S.X.
0.50	72.7	0.99	1620419_at	BQ794848	hypothetical protein LOC100241492	-	5e-1	At2g46330	AGP16 (ARABINOGALACTAN PROTEIN 16)	O.I.	H.G.	S.X.
0.47	67.7	0.98	1615929_at	CB970992	hypothetical protein LOC100246610	-	7e-16	At5g49580	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.35	48.5	0.98	1617244_s_at	CB341989	hypothetical protein LOC100262315	-	1e-23	At4g22150	PUX3	O.I.	H.G.	S.X.
0.31	41.3	0.98	1619248_at	CA813733	hypothetical protein LOC100264750	-	3e-1	At5g18100	CSD3 (copper/zinc superoxide dismutase 3)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	87.9	0.96	1622446_at	CB914323	-	-	8e-2	At4g18692	unknown protein	O.I.	H.G.	S.X.
0.60	81.9	0.98	1608082_s_at	CF403706	-	-	8e-1	At2g42280	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.
0.57	79.8	0.98	1617625_at	CB006850	hypothetical LOC100246722	-	2e-6	At3g05680	EMB2016 (embryo defective 2016)	O.I.	H.G.	S.X.
0.50	72.7	0.97	1616983_at	CF207498	hypothetical protein LOC100254117	-	1e+0	At5g45130	RHA1 (RAB HOMOLOG 1)	O.I.	H.G.	S.X.
0.50	72.7	0.98	1619198_at	CB983158	hypothetical protein LOC100257864	-	3e+0	At4g26790	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.
0.50	72.7	0.98	1610376_at	CB922451	hypothetical protein LOC100241274	-	8e-6	At5g65540	unknown protein	O.I.	H.G.	S.X.
0.50	72.7	0.98	1611587_at	CF511115	hypothetical protein LOC100266068	-	4e+0	At5g51545	LPA2 (low psii accumulation2)	O.I.	H.G.	S.X.
0.44	64.1	0.97	1611950_at	CB974808	hypothetical protein LOC100254581	-	5e-31	At1g03030	phosphoribulokinase/uridine kinase family protein	O.I.	H.G.	S.X.
0.44	64.1	0.98	1617263_at	CB004222	hypothetical protein LOC100251846	-	8e-18	At5g61140	DEAD box RNA helicase, putative	O.I.	H.G.	S.X.
0.43	61.5	0.95	1615988_at	CB348748	-	-	3e-13	At1g79030	DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative	O.I.	H.G.	S.X.
0.43	61.5	0.98	1618634_at	CF211062	hypothetical protein LOC100248740	-	5e-1	At1g64355	unknown protein	O.I.	H.G.	S.X.
0.40	57.7	0.96	1611502_at	CB913863	-	-	7e-14	At3g14180	transcription factor	O.I.	H.G.	S.X.
0.40	57.7	0.96	1620037_at	CK138193.1	-	-	1e+0	At5g02750	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.38	53.6	0.97	1620824_x_at	CF203725.1	-	-	1e+0	At5g56810	F-box family protein	O.I.	H.G.	S.X.
0.38	53.6	0.98	1615016_at	BQ794197	hypothetical protein LOC100241603	-	7e-2	At3g14480	glycine/proline-rich protein	O.I.	H.G.	S.X.
0.36	50.7	0.97	1610023_at	CF210818	hypothetical protein LOC100267903	-	6e-19	At4g36980	unknown protein	O.I.	H.G.	S.X.
0.36	50.7	0.98	1617945_at	CF212123	hypothetical protein LOC100265724	-	1e+0	At1g64460	phosphatidylinositol 3- and 4-kinase family protein	O.I.	H.G.	S.X.
0.36	50.7	0.98	1609452_at	BQ794280	hypothetical protein LOC100249768	-	3e-1	At4g31460	ribosomal protein L28 family protein	O.I.	H.G.	S.X.
0.33	45.7	0.97	1607616_at	CF511066	-	-	1e-27	At1g27320	AHK3 (ARABIDOPSIS HISTIDINE KINASE 3)	O.I.	H.G.	S.X.
0.33	45.7	0.97	1622126_at	CF568916	-	-	7e-8	At4g08230	glycine-rich protein	O.I.	H.G.	S.X.
0.33	45.7	0.98	1610390_at	CD799689	hypothetical protein LOC100259651	-	1e-17	At5g48160	OBE2 (OBERON2)	O.I.	H.G.	S.X.
0.33	45.7	0.98	1618197_at	BQ797561	hypothetical protein LOC100250454	-	4e-3	At1g09140	SF2/ASF-like splicing modulator (SRP30)	O.I.	H.G.	S.X.
0.31	41.3	0.96	1614367_at	CF515268	-	-	7e+0	At5g42410	auxin-responsive family protein	O.I.	H.G.	S.X.
0.31	41.3	0.96	1609344_at	CF209432	hypothetical protein LOC100246539	-	2e-37	At2g41900	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.
0.31	41.3	0.98	1620116_at	CF210995	hypothetical protein LOC100262620	-	3e-4	At5g47140	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.
0.31	41.3	0.98	1612834_at	CF215135	hypothetical protein LOC100264546	-	2e-17	At1g13450	DNA binding protein GT-1	O.I.	H.G.	S.X.
0.30	39.4	0.96	1609961_at	CB982487	-	-	4e+0	At4g33610	glycine-rich protein	O.I.	H.G.	S.X.
0.29	37.7	0.95	1617660_at	CB002386	-	-	5e+0	At3g21140	FMN binding	O.I.	H.G.	S.X.
0.29	37.7	0.98	1613625_at	CD011881	-	-	4e-1	At3g12490	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.
0.27	34.0	0.98	1611958_at	BQ800100	hypothetical protein LOC100265795	-	8e-18	At5g66930	unknown protein	O.I.	H.G.	S.X.
0.27	34.0	0.95	1613604_at	CK138243.1	-	-	1e-37	At5g47540	binding	O.I.	H.G.	S.X.
0.27	34.0	0.97	1620250_at	CB972696	hypothetical protein LOC100250521	-	8e-3	At4g08330	unknown protein	O.I.	H.G.	S.X.
0.27	34.0	0.98	1622885_at	CF510943	hypothetical protein LOC100254750	-	8e-2	At3g50750	brassinosteroid signalling positive regulator-related	O.I.	H.G.	S.X.
0.27	34.0	0.98	1610049_at	CB973592	hypothetical protein LOC100258658	-	1e+0	At5g52720	metal ion binding	O.I.	H.G.	S.X.
0.27	34.0	0.98	1613364_at	CD720561	hypothetical protein LOC100254952	-	3e-71	At3g14270	phosphatidylinositol-4-phosphate 5-kinase family protein	O.I.	H.G.	S.X.
0.26	32.0	0.95	1620868_at	CF203725.1	-	-	1e+0	At5g56810	F-box family protein	O.I.	H.G.	S.X.
0.25	30.5	0.97	1621463_at	CB921808	hypothetical protein LOC100262078	-	3e-13	At5g05710	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.
0.25	30.5	0.97	1614861_at	CD715182	hypothetical protein LOC100261096	-	1e-10	At1g49050	aspartyl protease family protein	O.I.	H.G.	S.X.
0.25	30.5	0.98	1606505_at	CB970568	hypothetical protein LOC100257948	-	3e+0	At3g21570	unknown protein	O.I.	H.G.	S.X.
0.25	30.5	0.98	1615058_at	CB349554	hypothetical protein LOC100251131	-	4e+0	At3g28290	AT14A	O.I.	H.G.	S.X.
0.25	30.5	0.98	1609850_at	CB979570	hypothetical protein LOC100244857	-	3e-7	At1g76510	ARID/BRIGHT DNA-binding domain-containing protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.9 96.6 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
3.4 95.5 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
3.1 94.6 GSM147708 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 37
2.8 93.4 GSM436411 V. riparia (VR, PI588259) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM147742 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 71
2.3 90.7 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56
2.1 89.1 GSM147739 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 68
2.0 88.2 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
3.9	96.6	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
3.4	95.5	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
3.1	94.6	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
2.8	93.4	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
2.3	90.7	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
2.1	89.1	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.0	88.2	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

Back to the CoP portal site

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Gene ID	1613489_at
Gene name
Homology with Arabidopsis	Similar to At3g25572: CPuORF11 (Conserved peptide upstream open reading frame 11) (HF=5e+0)
Module size	6 genes
NF	0.49
%ile	74.0

Co-expression analysis

Gene ID 1613489_at Gene name Homology with ArabidopsisSimilar to At3g25572: CPuORF11 (Conserved peptide upstream open reading frame 11) (HF=5e+0) Module size 6 genes NF 0.49 %ile 74.0

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID 1613489_at

Gene name
Homology with Arabidopsis Similar to At3g25572: CPuORF11 (Conserved peptide upstream open reading frame 11) (HF=5e+0)

Module size 6 genes

NF 0.49

%ile 74.0

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays