Co-expression analysis

Gene ID 1613489_at
Gene name
Homology with ArabidopsisSimilar to At3g25572: CPuORF11 (Conserved peptide upstream open reading frame 11) (HF=5e+0)
Module size 6 genes
NF 0.49
%ile 74.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7390.80.981613489_atCF403663--5e+0At3g25572CPuORF11 (Conserved peptide upstream open reading frame 11)O.I.H.G.S.X.
0.5375.20.981615702_atBQ797006hypothetical protein LOC100268087-4e-5At1g17980nucleotidyltransferase family proteinO.I.H.G.S.X.
0.5072.70.991620419_atBQ794848hypothetical protein LOC100241492-5e-1At2g46330AGP16 (ARABINOGALACTAN PROTEIN 16)O.I.H.G.S.X.
0.4767.70.981615929_atCB970992hypothetical protein LOC100246610-7e-16At5g49580DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.3548.50.981617244_s_atCB341989hypothetical protein LOC100262315-1e-23At4g22150PUX3O.I.H.G.S.X.
0.3141.30.981619248_atCA813733hypothetical protein LOC100264750-3e-1At5g18100CSD3 (copper/zinc superoxide dismutase 3)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.996.6GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO
3.495.5GSM147721Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation50Link to GEO
3.194.6GSM147708Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation37Link to GEO
2.893.4GSM436411V. riparia (VR, PI588259) SD, 13h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436369Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436389V. riparia (VR, PI588259) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM147742Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation71Link to GEO
2.390.7GSM147727Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation56Link to GEO
2.189.1GSM147739Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation68Link to GEO
2.088.2GSM147735Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation64Link to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.1776.2.A1_a_at, orthologous to the query gene, 1613489_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.2Ta.1776.2.A1_a_atAt3g25572--3e+0At5g23350GRAM domain-containing protein / ABA-responsive protein-relatedO.I.H.G.S.X.
0.7389.1Ta.1776.3.S1_atAt3g25572--2e+0At5g23350GRAM domain-containing protein / ABA-responsive protein-relatedO.I.H.G.S.X.
0.7389.1Ta.1776.1.S1_a_atAt3g25572--1e+0Atmg00750-O.I.H.G.S.X.
0.4666.8Ta.6020.1.S1_x_atAt3g25572--3e-12At3g01790ribosomal protein L13 family proteinO.I.H.G.S.X.
0.4362.2Ta.1843.1.S1_a_atAt3g25572--7e+0At5g55125unknown proteinO.I.H.G.S.X.
0.2939.2TaAffx.64802.1.A1_atAt3g25572--3e+0At1g43610NLI interacting factor (NIF) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



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