Co-expression analysis

Gene ID 1613489_at
Gene name
Homology with ArabidopsisSimilar to At3g25572: CPuORF11 (Conserved peptide upstream open reading frame 11) (HF=5e+0)
Module size 6 genes
NF 0.49
%ile 74.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7390.80.981613489_atCF403663--5e+0At3g25572CPuORF11 (Conserved peptide upstream open reading frame 11)O.I.H.G.S.X.
0.5375.20.981615702_atBQ797006hypothetical protein LOC100268087-4e-5At1g17980nucleotidyltransferase family proteinO.I.H.G.S.X.
0.5072.70.991620419_atBQ794848hypothetical protein LOC100241492-5e-1At2g46330AGP16 (ARABINOGALACTAN PROTEIN 16)O.I.H.G.S.X.
0.4767.70.981615929_atCB970992hypothetical protein LOC100246610-7e-16At5g49580DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.3548.50.981617244_s_atCB341989hypothetical protein LOC100262315-1e-23At4g22150PUX3O.I.H.G.S.X.
0.3141.30.981619248_atCA813733hypothetical protein LOC100264750-3e-1At5g18100CSD3 (copper/zinc superoxide dismutase 3)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.996.6GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO
3.495.5GSM147721Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation50Link to GEO
3.194.6GSM147708Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation37Link to GEO
2.893.4GSM436411V. riparia (VR, PI588259) SD, 13h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436369Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436389V. riparia (VR, PI588259) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM147742Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation71Link to GEO
2.390.7GSM147727Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation56Link to GEO
2.189.1GSM147739Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation68Link to GEO
2.088.2GSM147735Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation64Link to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.85968.1.S1_at, orthologous to the query gene, 1613489_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5178.9PtpAffx.85968.1.S1_atAt3g25572hypothetical protein-3e-6At4g24560UBP16 (UBIQUITIN-SPECIFIC PROTEASE 16)O.I.H.G.S.X.
0.4471.9PtpAffx.91461.1.A1_s_atAt3g25572hypothetical protein-1e-7At3g15180proteasome-relatedO.I.H.G.S.X.
0.4067.0PtpAffx.7050.1.S1_a_atAt3g25572hypothetical protein-1e-38At1g07540TRFL2 (TRF-LIKE 2)O.I.H.G.S.X.
0.3863.7Ptp.4742.2.S1_a_atAt3g25572hypothetical protein-7e-3At1g32030DNA bindingO.I.H.G.S.X.
0.3559.7PtpAffx.221153.1.S1_atAt3g25572hypothetical protein-2e-3At1g47310unknown proteinO.I.H.G.S.X.
0.3255.2Ptp.1038.1.A1_atAt3g25572hypothetical protein-2e-15At1g01770unknown proteinO.I.H.G.S.X.
0.2950.5PtpAffx.89364.1.A1_s_atAt3g25572hypothetical protein-6e-31At5g02800protein kinase family proteinO.I.H.G.S.X.
0.2950.5PtpAffx.96429.1.S1_atAt3g25572hypothetical protein-7e-10At1g21760FBP7 (F-BOX PROTEIN 7)O.I.H.G.S.X.
0.2850.5Ptp.5878.1.S1_atAt3g25572hypothetical protein-9e-25At4g30960SIP3 (SOS3-INTERACTING PROTEIN 3)O.I.H.G.S.X.
0.2543.6PtpAffx.207989.1.S1_s_atAt3g25572hypothetical protein-1e-37At1g26110unknown proteinO.I.H.G.S.X.
0.2340.5PtpAffx.212975.1.S1_s_atAt3g25572hypothetical protein-7e-5At4g19670zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays



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