Co-expression analysis

Gene ID	1613489_at
Gene name
Homology with Arabidopsis	Similar to At3g25572: CPuORF11 (Conserved peptide upstream open reading frame 11) (HF=5e+0)
Module size	6 genes
NF	0.49
%ile	74.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	90.8	0.98	1613489_at	CF403663	-	-	5e+0	At3g25572	CPuORF11 (Conserved peptide upstream open reading frame 11)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.98	1615702_at	BQ797006	hypothetical protein LOC100268087	-	4e-5	At1g17980	nucleotidyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.99	1620419_at	BQ794848	hypothetical protein LOC100241492	-	5e-1	At2g46330	AGP16 (ARABINOGALACTAN PROTEIN 16)	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.98	1615929_at	CB970992	hypothetical protein LOC100246610	-	7e-16	At5g49580	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.98	1617244_s_at	CB341989	hypothetical protein LOC100262315	-	1e-23	At4g22150	PUX3	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.98	1619248_at	CA813733	hypothetical protein LOC100264750	-	3e-1	At5g18100	CSD3 (copper/zinc superoxide dismutase 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	96.6	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
3.4	95.5	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
3.1	94.6	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
2.8	93.4	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
2.3	90.7	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
2.1	89.1	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.0	88.2	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64

Inter-species module comparison

A co-expression module including the barley gene, HVSMEn0015O15f_s_at, orthologous to the query gene, 1613489_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	58.9	HVSMEn0015O15f_s_at	At3g25572	-	-	1e-3	At1g64060	ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)	O.I.	H.G.	S.X.	Please select
0.44	58.9	HA10J04u_at	At3g25572	-	-	2e+0	At3g02065	DEAD/DEAH box helicase family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	rbags18l12_at	At3g25572	-	-	7e+0	At5g57510	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	HT12B06u_at	At3g25572	-	-	2e-1	At1g24450	NFD2 (NUCLEAR FUSION DEFECTIVE 2)	O.I.	H.G.	S.X.	Please select
0.27	32.1	HA04k14r_x_at	At3g25572	-	-	1e+1	At5g66110	metal ion binding	O.I.	H.G.	S.X.	Please select
0.12	10.4	HVSMEm0001D23r2_at	At3g25572	-	-	1e+0	At3g27416	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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