Co-expression analysis

Gene ID	1613429_s_at
Gene name	hypothetical protein LOC100259515
Homology with Arabidopsis	Similar to At2g22240: MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2) (HF=0)
Module size	6 genes
NF	0.35
%ile	51.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	77.3	0.94	1613429_s_at	CB974870	hypothetical protein LOC100259515	-	0	At2g22240	MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2)	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.94	1614155_at	CB346380	hypothetical protein LOC100258936	-	3e-1	At4g37235	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.94	1607032_s_at	CB345316	hypothetical protein LOC100250535	-	2e-18	At1g01060	LHY (LATE ELONGATED HYPOCOTYL)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.94	1609268_at	CF414192	hypothetical protein LOC100253859	-	2e-39	At4g26850	VTC2 (vitamin c defective 2)	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.94	1616851_at	CF202152.1	hypothetical protein LOC100265283	-	5e-15	At3g02580	STE1 (STEROL 1)	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.94	1613017_s_at	CD003887	hypothetical protein LOC100253859	-	2e-39	At4g26850	VTC2 (vitamin c defective 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.7	97.7	GSM436423	V. riparia (VR, PI588259) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.3	97.2	GSM436422	V. riparia (VR, PI588259) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436421	V. riparia (VR, PI588259) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
2.4	91.3	GSM436426	V. riparia (VR, PI588259) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436385	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147684	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	13

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage