Co-expression analysis

Gene ID	1613415_at
Gene name
Homology with Arabidopsis	Similar to At3g44990: XTR8 (XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8) (HF=1e-11)
Module size	21 genes
NF	0.43
%ile	63.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	92.6	0.87	1613415_at	AB074999.1	-	-	1e-11	At3g44990	XTR8 (XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8)	O.I.	H.G.	S.X.	Please select
0.70	88.6	0.95	1616147_at	CF404954	hypothetical protein LOC100243192	-	2e-6	At2g26800	hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative	O.I.	H.G.	S.X.	Please select
0.58	79.8	0.92	1610108_at	BQ794851	-	-	1e+0	At4g31730	GDU1 (GLUTAMINE DUMPER 1)	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.94	1606482_at	BQ796112	hypothetical protein LOC100243077	-	3e-10	At3g44830	lecithin:cholesterol acyltransferase family protein / LACT family protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.94	1620050_at	CB009432	hypothetical protein LOC100244027	-	1e-5	At5g17500	glycosyl hydrolase family 5 protein / cellulase family protein	O.I.	H.G.	S.X.	Please select
0.51	73.2	0.93	1607492_at	CF205018.1	ripening-related protein-like	-	4e-1	At3g63420	AGG1 (Arabidopsis Ggamma-subunit 1)	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.93	1609591_at	CD799271	hypothetical protein LOC100241753	-	1e-3	At3g61900	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.94	1615374_at	CB911656	hypothetical protein LOC100241955	-	8e-1	At1g34000	OHP2 (ONE-HELIX PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.94	1619968_at	CF604378	similar to cysteine protease Cp5	-	3e-2	At3g19400	cysteine proteinase, putative	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.90	1622366_at	CD797898	-	-	2e-1	At2g22970	serine carboxypeptidase S10 family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.96	1612185_at	CB008768	hypothetical protein LOC100245556	-	3e-10	At5g66460	(1-4)-beta-mannan endohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.94	1618576_at	BQ800615	pectate lyase PL1-like	-	4e-124	At4g13710	pectate lyase family protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.94	1612296_at	CD802074	hypothetical protein LOC100241683	-	4e-12	At3g55920	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.93	1608616_at	CF208819	-	-	2e+0	At5g53880	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.92	1618319_at	BQ794118	-	-	4e+0	At3g60670	zinc-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.94	1610428_at	CD012983	hypothetical protein LOC100263040	-	2e-4	At1g32090	early-responsive to dehydration protein-related / ERD protein-related	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.92	1612226_at	CB974061	hypothetical protein LOC100259151	-	1e-29	At1g22280	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.92	1619659_s_at	CF405842	pectate lyase PL1-like	-	2e-1	At4g26230	60S ribosomal protein L31 (RPL31B)	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.94	1620218_at	CF405310	hypothetical protein LOC100262456	-	1e+0	At1g64490	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.95	1619862_at	CB979196	hypothetical protein LOC100251016	-	3e-1	At4g32470	ubiquinol-cytochrome C reductase complex 14 kDa protein, putative	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.90	1616279_at	BQ796307	hypothetical protein LOC100260173	-	1e-1	At1g70440	SRO3 (SIMILAR TO RCD ONE 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.7	93.0	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.0	88.2	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28
1.9	87.2	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147705	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	34
1.8	86.0	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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