Co-expression analysis

Gene ID	1613412_at
Gene name
Homology with Arabidopsis	Similar to At1g66820: glycine-rich protein (HF=1e+0)
Module size	20 genes
NF	0.24
%ile	33.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	89.7	0.93	1613412_at	CF517688	-	-	1e+0	At1g66820	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.95	1615624_at	CB970377	-	-	3e-11	At1g45231	-	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.97	1620330_at	CB981833	-	-	7e-11	At3g60590	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.96	1613948_at	CF405473	hypothetical protein LOC100261411	-	6e-14	At3g53800	armadillo/beta-catenin repeat family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.96	1621758_at	CB916215	hypothetical protein LOC100241894	-	8e-6	At5g03560	nucleobase:cation symporter	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.96	1609207_at	CF414904	hypothetical protein LOC100250630	-	2e-4	At4g22740	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.97	1614679_at	CF372472	hypothetical protein LOC100265735	-	2e-100	At4g22340	phosphatidate cytidylyltransferase, putative / CDP-diglyceride synthetase, putative	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.97	1615223_at	CF212356	hypothetical protein LOC100255702	-	1e-19	At3g27740	CARA (CARBAMOYL PHOSPHATE SYNTHETASE A)	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.96	1607124_at	CF211512	hypothetical protein LOC100242432	-	1e-31	At3g59910	-	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.97	1615095_at	CB347601	hypothetical protein LOC100266582	-	3e-77	At5g61670	-	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.97	1606632_at	CB981946	hypothetical protein LOC100257317	-	2e-13	At4g04950	thioredoxin family protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.96	1622174_at	CB912233	hypothetical protein LOC100241032	-	5e+0	At4g38090	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.97	1620775_at	CA814175	hypothetical protein LOC100260585	-	6e+0	At5g11340	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.97	1622691_s_at	AF176496.1	hypothetical protein LOC100264325	-	7e-13	At1g09640	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.98	1621040_at	BQ799491	hypothetical protein LOC100252271	-	1e-1	At1g31750	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.95	1607175_at	CF514113	-	-	1e+0	At2g02500	ISPD	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.96	1609843_at	CB981161	hypothetical protein LOC100242269	-	2e+0	At5g54790	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.96	1607378_at	CF517474	hypothetical protein LOC100259080	-	1e+0	At1g05450	protease inhibitor/seed storage/lipid transfer protein (LTP)-related	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.96	1614645_at	CB917806	similar to putative anti-virus transcriptional factor	-	1e-4	At5g62910	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.96	1618468_at	CB969705	hypothetical protein LOC100260199	-	8e-1	At3g57390	AGL18	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.9	93.8	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
2.1	89.1	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.1	89.1	GSM147684	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	13
1.9	87.2	GSM436357	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.8	86.0	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.7	84.7	GSM436356	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
1.7	84.7	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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