CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1613387_at

Gene name hypothetical protein LOC100251150
Homology with Arabidopsis Similar to At5g01460: LMBR1 integral membrane family protein (HF=1e-25)

Module size 14 genes

NF 0.43

%ile 65.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.52 73.9 0.98 1613387_at CB971364 hypothetical protein LOC100251150 - 1e-25 At5g01460 LMBR1 integral membrane family protein O.I. H.G. S.X.
0.67 87.9 0.99 1610278_s_at CA817273 hypothetical protein LOC100259495 - 5e-38 At4g33250 EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K) O.I. H.G. S.X.
0.61 83.2 0.99 1615911_at CF512086 hypothetical protein LOC100243469 - 2e-66 At3g57290 EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E) O.I. H.G. S.X.
0.59 80.6 0.99 1619907_at BQ793230 similar to 26S proteasome subunit RPN5b - 3e-26 At5g64760 RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) O.I. H.G. S.X.
0.49 69.3 0.98 1616584_at CF514925 hypothetical protein LOC100240812 - 1e-73 At5g27630 ACBP5 (ACYL-COA BINDING PROTEIN 5) O.I. H.G. S.X.
0.47 67.7 0.99 1614425_at CB339536 hypothetical protein LOC100251424 - 8e-7 At3g02200 proteasome family protein O.I. H.G. S.X.
0.40 57.7 0.99 1616704_at CF213956 hypothetical protein LOC100262746 - 5e-28 At4g31180 aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative O.I. H.G. S.X.
0.40 57.7 0.99 1617248_at CB979169 hypothetical protein LOC100265801 - 4e-19 At3g58560 endonuclease/exonuclease/phosphatase family protein O.I. H.G. S.X.
0.40 57.7 0.99 1618864_at BQ800592 similar to ribosomal protein L10a - 5e-56 At1g08360 60S ribosomal protein L10A (RPL10aA) O.I. H.G. S.X.
0.33 45.7 0.99 1611523_at CD801109 hypothetical protein LOC100267138 - 6e-16 At3g21865 PEX22 (peroxin 22) O.I. H.G. S.X.
0.33 45.7 0.99 1619414_at CF607341 hypothetical protein LOC100241708 - 1e-8 At4g23460 beta-adaptin, putative O.I. H.G. S.X.
0.32 43.1 0.98 1622714_at BQ796372 hypothetical protein LOC100254120 - 2e-12 At2g30880 pleckstrin homology (PH) domain-containing protein O.I. H.G. S.X.
0.32 43.1 0.99 1622693_at CB976483 hypothetical protein LOC100246014 - 3e-10 At4g12650 - O.I. H.G. S.X.
0.31 41.3 0.99 1608499_s_at CB344482 hypothetical protein LOC100262663 - 1e-116 At3g08580 AAC1 (ADP/ATP CARRIER 1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.2 89.9 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
2.1 89.1 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
2.1 89.1 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
2.0 88.2 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
2.0 88.2 GSM436367 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
1.8 86.0 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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