Co-expression analysis

Gene ID	1613373_at
Gene name	hypothetical protein LOC100245626
Homology with Arabidopsis	Similar to At3g25500: AFH1 (FORMIN HOMOLOGY 1) (HF=5e-7)
Module size	6 genes
NF	0.54
%ile	79.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.97	1613373_at	BM437091	hypothetical protein LOC100245626	-	5e-7	At3g25500	AFH1 (FORMIN HOMOLOGY 1)	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.98	1619974_at	CF415318	hypothetical protein LOC100250685	-	1e-3	At5g17690	TFL2 (TERMINAL FLOWER 2)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1618126_at	CF213298	hypothetical protein LOC100261549	-	3e-8	At1g76660	-	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1622185_at	CF209948	-	-	3e-2	At1g78915	binding	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1616820_at	CF210812	-	-	2e-1	At3g27835	-	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1608829_at	CD802477	hypothetical protein LOC100258592	-	9e-24	At4g03415	catalytic/ protein serine/threonine phosphatase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	96.7	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.0	96.7	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.6	96.0	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.5	95.7	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.5	91.9	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
2.4	91.3	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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