Co-expression analysis

Gene ID	1613318_at
Gene name	sucrose responsive element binding protein
Homology with Arabidopsis	Similar to At4g37260: MYB73 (MYB DOMAIN PROTEIN 73) (HF=2e-10)
Module size	29 genes
NF	0.38
%ile	55.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	95.1	0.94	1613318_at	BQ799524	sucrose responsive element binding protein	-	2e-10	At4g37260	MYB73 (MYB DOMAIN PROTEIN 73)	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.95	1606568_at	CF513503	hypothetical protein LOC100250586	-	4e-12	At2g42620	MAX2 (MORE AXILLARY BRANCHES 2)	O.I.	H.G.	S.X.	Please select
0.58	79.8	0.95	1610669_at	CF208675	hypothetical protein LOC100259403	-	6e-2	At1g69825	-	O.I.	H.G.	S.X.	Please select
0.58	79.8	0.97	1607161_at	CF372023	-	-	2e+0	At2g18721	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	75.7	0.95	1621867_at	CF516530	-	-	5e-2	At5g66000	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.97	1610932_at	CF209452	hypothetical protein LOC100261114	-	9e-1	At2g32645	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.97	1609364_at	CD013445	similar to thioredoxin-related protein	-	8e-6	At3g56580	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.96	1621461_at	CB918305	hypothetical protein LOC100262678	-	1e+0	At5g39850	40S ribosomal protein S9 (RPS9C)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.95	1609668_at	CA816744	hypothetical protein LOC100256598	-	1e+0	At3g12430	3'-5' exonuclease/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.95	1616076_s_at	CF972320.1	hypothetical protein LOC100263773	-	7e-1	At2g17130	IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2)	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.96	1617270_at	CF209681	-	-	2e+0	At4g36260	STY2 (STYLISH 2)	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.96	1615772_s_at	CB920828	hypothetical protein LOC100257232	-	7e-49	At3g62830	AUD1	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.97	1622665_s_at	CF215188	hypothetical protein LOC100246461	-	5e+0	At5g19257	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.95	1613964_at	BQ793084	-	-	9e-1	At2g43910	thiol methyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1608899_at	CF513763	hypothetical protein LOC100266255	-	8e-8	At1g25580	ANAC008 (Arabidopsis NAC domain containing protein 8)	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.97	1611538_at	CB976216	hypothetical protein LOC100258505	-	3e-12	At2g35630	MOR1 (MICROTUBULE ORGANIZATION 1)	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.95	1622787_at	CF607318	hypothetical protein LOC100244878	-	4e-19	At5g62500	ATEB1B (END BINDING PROTEIN 1B)	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.97	1616820_at	CF210812	-	-	2e-1	At3g27835	-	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.97	1616920_at	CF512566	hypothetical protein LOC100251933	-	2e-12	At5g05610	AL1 (ALFIN-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.98	1613739_at	BQ795771	hypothetical protein LOC100244774	-	3e-11	At4g10110	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.97	1611882_at	CF512921	hypothetical protein LOC100268072	-	7e-13	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.97	1620327_at	CF403603	hypothetical protein LOC100259936	-	4e+0	At2g30370	allergen-related	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.97	1619242_at	CB979954	-	-	4e-12	At5g48385	-	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.97	1619851_at	CB978591	hypothetical protein LOC100267367	-	2e+0	At4g30880	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.97	1613476_at	CD799773	hypothetical protein LOC100248089	-	2e-9	At5g62290	nucleotide-sensitive chloride conductance regulator (ICln) family protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.97	1613750_at	CF510958	hypothetical protein LOC100257580	-	1e+0	At4g20470	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.97	1617323_at	CF373223	hypothetical protein LOC100252590	-	4e-7	At1g55340	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.97	1609532_s_at	CF211115	-	-	2e+0	At2g33390	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.97	1614106_at	CB972413	hypothetical protein LOC100253249	-	5e-51	At3g27090	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.2	89.9	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.2	89.9	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
2.1	89.1	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
2.1	89.1	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59
2.0	88.2	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.0	88.2	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
1.9	87.2	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage