Co-expression analysis

Gene ID 1613268_at
Gene name hypothetical protein LOC100260148
Homology with ArabidopsisSimilar to At3g48010: ATCNGC16 (HF=2e-3)
Module size 11 genes
NF 0.27
%ile 37.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9599.60.931613268_atCB342482hypothetical protein LOC100260148-2e-3At3g48010ATCNGC16O.I.H.G.S.X.
0.5980.60.951614058_atCB339924hypothetical protein LOC100264612-1e+0At3g08636unknown proteinO.I.H.G.S.X.
0.3345.70.981606773_atCF208569hypothetical protein LOC100243052-1e-18At3g54300ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)O.I.H.G.S.X.
0.3141.30.981611250_atCB922487hypothetical protein LOC100249628-9e-4At4g24100protein kinase family proteinO.I.H.G.S.X.
0.2937.70.971620717_atBQ799683hypothetical protein LOC100255378-3e-15At5g58430ATEXO70B1 (exocyst subunit EXO70 family protein B1)O.I.H.G.S.X.
0.2937.70.981615347_atCF518500hypothetical protein LOC100243052-2e-20At3g54300ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)O.I.H.G.S.X.
0.2734.00.971614861_atCD715182hypothetical protein LOC100261096-1e-10At1g49050aspartyl protease family proteinO.I.H.G.S.X.
0.2530.50.971614732_atBQ800054hypothetical protein LOC100254404-5e-29At3g55620emb1624 (embryo defective 1624)O.I.H.G.S.X.
0.2124.00.971616171_atBM437490hypothetical protein LOC100251471-3e-18At5g48380leucine-rich repeat family protein / protein kinase family proteinO.I.H.G.S.X.
0.088.50.981606430_atCF510781hypothetical protein LOC100251243-1e-33At1g79000HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1)O.I.H.G.S.X.
0.066.80.971621811_atCB341999SINA2p-5e-48At3g58040SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.699.7GSM287869Green hard berry C3 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.796.2GSM287867Green hard berry C1 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.595.7GSM287883Green soft berry A23 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.595.7GSM299462D_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.495.5GSM299458D_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.294.9GSM299451B_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.294.9GSM299455C_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.194.6GSM299459D_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.094.2GSM299452B_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.993.8GSM299461C_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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