Co-expression analysis

Gene ID	1613168_at
Gene name	hypothetical protein LOC100257704
Homology with Arabidopsis	Similar to At1g29880: glycyl-tRNA synthetase / glycine--tRNA ligase (HF=4e-42)
Module size	6 genes
NF	0.35
%ile	51.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	83.2	0.95	1613168_at	CB971028	hypothetical protein LOC100257704	-	4e-42	At1g29880	glycyl-tRNA synthetase / glycine--tRNA ligase	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.95	1620856_at	CF207007.1	hypothetical protein LOC100264031	-	3e-23	At2g23840	HNH endonuclease domain-containing protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.95	1609782_at	BQ794522	hypothetical protein LOC100264876	-	2e-2	At4g21065	-	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.95	1615477_at	CF212673	hypothetical protein LOC100244108	-	9e-2	At2g36295	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.95	1607331_at	CA808975	hypothetical protein LOC100256147	-	2e-89	At4g33480	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.95	1618888_at	CF404600	hypothetical protein LOC100261778	-	1e+0	At5g46020	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	98.4	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.6	96.0	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.5	95.7	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.0	94.2	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.3	90.7	GSM147695	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	24

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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